apex2 (apex2)


Basic Information

Item Value
gene id apex2
gene name apex2
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13873546 ~ 13877960 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026937501.2
AGTGATGTGTACACTTCCCGCACACAGAGCTGCACGCTgttggtggagtgtgtgtgcgcgcgcgcgcggtGTGTGTCTGTAGACCAAAACATGAAGATTGTCACTTGGAACATAAATGGCATAAGAACTTTTAAAAACGGGATAAAGTCGGCGCTTGACTCGTTCGACGCTGATATCATATGCTTGCAGGAAACCAAAGTGACGCGCGACCTGCTGGACGAAAGGACTGCAATTGTGGATGGATACAACTCTTACTTCAGCTTTAACCGAGGACGCACTGGCTACTCGGGGGTCGCGACGTTTTGTAAAGACTCCATCACCCCATTCGCTGCAGAAGAAGGACTGACAGGTCGCCTTGTCAACCATCGAGAGGCTgttggttgctatggtgatcAGGGGGAATTCTCTATAGAGGAGCTCCAGTCACTTGATAATGAAGGAAGAGCCGTAATCACCCAACACAAGTTCAAGCATTCAGTGGAAGCAGAAGGATTTGAGACACTGACTATCATCAATGTGTATTGCCCGCGTGCAGATCCAGAAAAGCCAGAGAGAAAGCTGTTTAAACTGCAGTTTTACAAACTACTGCAGAGCAGAGCTGAGGCACTTGTGGGGCCTGGAAGTCATGTGATCATTTTGGGCGATATAAACACCTCTCACCGGCCCATAGACCACTGTGACCCAGATGATGTGGAGAACTTTGAGGACAATCCAGGCAGAAAGTGGTTGAACAGCTTCCTGTTTAGTCCGGCAGAAAACGGGAATCATGAAGAGGAAGGTTCTGAGCCCTCCCAGAATTGTGTGTCTGGTCGTCATTTTATTGACACCTTCCGCCATTTCCATCCTACACGTACCAACGCCTTCACATGCTGGTCTACACGTACGGGCGCTAGGCAAACCAACTATGGCACCCGCATCGACTATATCTTTGCCAATCATTCACTAGTTGAGACAAACTTACTGAATGCAGATATCATGCCAGAAGTGGAGGGTTCTGATCACTGTCCCATATGGGCTAAGCTAAGCTGTACTTTTGTACCAAGTCCTAAGTGCCCAGCTCTGTGCACCTGTTATATGCCTGAGTTCATGGGGAAGCAGCAGAAACTCTTGCGCTTTCTTGTTAAGGTTTCTGAGCAACACACAGATTGCAGAGACATTGAAAAACCTTTGCCTGGATCTCAAGAGGTTGGGGAGATTCGTGAGAACCTCAATCCTCTAGCAGCAGGTATCAGTACTGGGAGCAAGAGACCTGCAGATGAACTACCAGAGTCATCTAcatttaaggggaaaaaaagcaaaaatgctaaaaaggtAACTAAACCTCAGGGCAGTCTTCTGACCTTCTTTAAACCTAAACTGACCCCTGTGGTATCTTCAAGCCAGAGCCTAAGCTCAGGTGAGAACACTGAGACAAGTTTGAAGAGTGAGGCCGTCATATCCGAGATCCACAAGGGTACAGAAAATGATGTCAACAGCCGCAGTGCAACCCACAGCATGCTTACAGAGTGCCACTCTGAGGCAAAAGTGAAGGGTGAAACAAGTAAGTTCAGGGTCACCAAGActaaggaagaagaagagggtTGTCAGGCTCAGATCCAGAGCAACACCACACCCAATCAGGAGACCAAGAAAGGGTCTTGCCCAGACTTTTGGAAATCAGTTTTGCATGGACCACCCCAGCCGCCACTGTGTAATGCACACAACGAGCCGTGTGTGCTGCGGACTGTGAAAAAACCTGGACCGAATTTGGGCCGGCAGTTTTTTGTATGTGCCCGTCCTCAGGGTCACACGTCCAATCCACAGGCAAGGTGTAATTTCTTTGTCTGGGTGGACAAACGCAAGTAGAAGCCCACTGAGGTCTCTGTAAAAAGATTGTTTATTTGGTACTAGaaaaatgttgaatttttttatttttatgtttttattgtataaataaatgatttctaTATTTCATGA

Function

symbol description
apex2 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in mitochondrion. Predicted to be active in nucleus. Orthologous to human APEX2 (apurinic/apyrimidinic endodeoxyribonuclease 2).

NR:

description
DNA-(apurinic or apyrimidinic site) lyase 2

GO:

id name namespace
GO:0005488 binding molecular_function
GO:0004518 nuclease activity molecular_function

KEGG:

id description
K10772 APEX2; AP endonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026937501.2 True 1956 mRNA 0.47 6 13873546 13877960

Neighbor

gene id symbol gene type direction distance location
csde1 csde1 coding upstream 5426 13838338 ~ 13868120 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding upstream 40249 13823098 ~ 13833297 (+)
magixa LOC108265805,LOC108437579 coding upstream 184617 13616604 ~ 13688929 (+)
emilin3a LOC108265066 coding upstream 331872 13523721 ~ 13541674 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 383547 13464131 ~ 13489999 (+)
lrif1 lrif1 coding downstream 1151 13879111 ~ 13885667 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 276898 14154858 ~ 14171793 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding downstream 321743 14199703 ~ 14232129 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding downstream 388665 14266625 ~ 14269429 (+)
prf1.5 LOC108265013 coding downstream 395028 14272988 ~ 14279281 (+)
G132138 pdzd4,LOC108437581 non-coding upstream 73930 13794582 ~ 13799616 (+)
G132136 NA non-coding upstream 79241 13793156 ~ 13794305 (+)
G132139 NA non-coding upstream 80837 13791862 ~ 13792709 (+)
G132115 NA non-coding upstream 302574 13570392 ~ 13570972 (+)
G132081 NA non-coding upstream 372863 13500389 ~ 13500683 (+)
G132357 NA non-coding downstream 132543 14010503 ~ 14013621 (+)
G132391 NA non-coding downstream 207692 14085652 ~ 14087881 (+)
G132361 NA non-coding downstream 239015 14116975 ~ 14120415 (+)
G132405 LOC108265425 non-coding downstream 355068 14233028 ~ 14234254 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding downstream 367616 14245576 ~ 14246134 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 82229 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1268841 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1643545 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1877694 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 2159514 11705547 ~ 11714032 (+)
dock8 dock8 other downstream 12444 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 71977 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 444212 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1062341 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 1101873 14979833 ~ 14979904 (+)

Expression


Co-expression Network