col2a1a (col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244)


Basic Information

Item Value
gene id col2a1a
gene name col2a1a,LOC108265655,LOC107668081,LOC107585898,LOC107731244
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11738339 ~ 11763591 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306594.1
CATAACTGCACCGGTGGACATAAAACCGCGGAGCTCGCGCTGACGCGGTGGGTGCTGTCTGCGCACAGGGGCCTGGCGTCGGATcccccaaaaaacacacaacactcatCAAAAAGCCAACACACTCCCTGCGATACACTGCAGCTGCAGCTTCGCCGATCTCGGCGAAATCTTTCACTCTGAGGAACTGCATGTCTGACTTTTAGACATGTTCAGATTTGTGGACTCACGGACTGTCCTGCTACTTGTAGCGACACAATGTATTTTGCAAGCCGTTGTCAGATGTCAACGAGAGGATGACCAGGAGGACTTAGGCGGCTGCATCCAAGATGGCCAACATTTCGAGGACCGTGCAGTGTGGAAGCCTGAAGCGTGtcgggtctgtgtgtgtgactcggGGTCAGTGCTGTGTGATGAGGTCATCTGCGAGGAGCTGAGGGATTGCAACAATCCCATCATTCCACCTGGAGAGTGCTGCCCCATCTGCCCTGCTGACCAAGACCAGACTAGCGAGACCTTTGGTGCAAAGGGACAAAAAGGAGAACCTGGCGATATTGCAAATgTTCTAGGACCGAGAGGACCGGCTGGCCCCATGGGACCACCTGGAGAGCAGGGACCACGTGGAGAGAGAGGCCCTAAGGGTGAGAAGGGAAGTCCAGGCCCCAGAGGAAGAGACGGCGAGCCCGGCACTCCAGGCAACCCTGGACCTCCCGGACCTCCCGGCCCACCAGGCCCAAACCCACCTGGACTTGGAGGAaaCTTTGCGGCTCAGATGGCTGGAGGTTTTGATGAGAAAGCAGGAGGAGCTAACATGGGTGTGATGCAAGGCCCGATGgGCCCCATGGGTCCCCGTGGTCCCCCTGGTCCCACTGGAGCACCTGGCCCACAAGGGTTCCAAGGCAGCCCGGGAGAAGCTGGCGAACCTGGACCTTCTGGCTCTATGGGACCTCGTGGCCCACCTGGACCACCTGGAAAATCTGGAAGTGATGGTGAGAATGGCAAACCTGGTAAGCCTGGTGACCGTGGACCCACTGGACCTCAGGGAGCTCGTGGATTCCCTGGAACCCCTGGACTTCCTGGCATCAAGGGACACAGAGGACACCCAGGTCTTGATGGCGCCAAGGGAGAGACTGGAGCTGCTGGAGCTAAGGGTGAGTCAGGTGCACCTGGTGAGAATGGCGCCCCTGGACCGATGGGCCCTCGTGGTCTTCCTGGTGAGAGAGGACGCCCTGGACCCTCTGGAGCTGCTGGTGCCCGTGGTAATGATGGTCTTCCTGGGCCTGCTGGTCCTCCTGGTCCTGTTGGTCCTGCTGGTGCCCCAGGTTTCCCAGGAGCCCCTGGTTCTAAGGGTGAGGCCGGACCTACTGGTGCTCGTGGAGCTGAGGGAGCCCAAGGACCCCGTGGAGAGGCTGGCACTCCAGGTTCTCCTGGACCTGCTGGAGCTTCTGGTAACCCTGGTACTGATGGTATTCCTGGAGCTAAAGGATCTGCTGGTGCCCCTGGTATTGCTGGTGCCCCAGGATTCCCAGGACCTCGTGGCCCACCTGGACCTCAGGGAGCTACCGGACCTCTTGGGCCCAAGGGTCAGAGTGGAGACCCTGGTATCCCAGGATTTAAGGGAGAGGCTGGACCAAAAGGAGAGAGGGGTGTTGCAGGACCTCAGGGTGCCCCAGGCCCAATTGGTGAAGAGGGTAAGAGAGGACCTAGAGGAGAGCCCGGTTCTGCTGGCCCTCTTGGACCtccaggagagagaGGAGCTCCAGGTAACCGTGGATTCCCAGGTCAAGATGGTCTTCCTGGTGCTAAGGGTGCTCCTGGTGATCGTGGTGTTTCTGGATTGTCTGGACCAAAAGGGGCTGTTGGAGATCCTGGTCGTCCTGGCGAGCCTGGTCTTCCTGGGGCAAGAGGTCTCACTGGTCGCCCTGGAGATGCTGGACCCCAAGGAAAAGTTGGCCCAACTGGTGCTCCTGGTGAGGACGGTCGTCCTGGTCCCCCTGGGCCTCAGGGAGCTCGTGGACAGCCTGGCGTGATGGGATTCCCCGGACCCAAGGGAGCCAATGGAGAGCCTGGCAAATCTGGAGAGAAAGGACTTGTTGGCAGCCCTGGTCTCAGAGGTTTGCCTGGTAAAGATGGGGAGACTGGAGCTGCTGGTCCTCCTGGCCCTGCTGGACCTGCTGGAGAGAGAGGTGAACAAGGACAGCCTGGTCCTCCTGGCTTCCAGggtTTGCCTGGACCTGGTGGACCACCAGGAGAGGCCGGCAAACCAGGTGACCAGGGTGTTCCTGGAGAGAGTGGTGCCCCTGGTGTGGTTGGACCAAGAGGTGAGCGTGGTTTCCCTGGTGAGAGAGGAAGTGCTGGACCCCAGGGTCTTCAGGGACCCAGAGGCCTTCCTGGAACTCCTGGAACTGATGGACCCAAGGGTGCCATAGGCCCGGCTGGTACTGCTGGTGCCCAGGGTCCTCCTGGTCTGCAGGGTATGCCAGGTGAAAGAGGTTCTGCTGGTATCTCTGGACCTAAGGGTGACAGAGGTGACTCCGGAGAGAAAGGACCTGAGGGAGCTCCTGGCAAAGATGGTGCAAGAGGTTTGACTGGCCCTATTGGTCCACCTGGTCCTTCTGGTCCCAATGGAGCTAAGGGTGAAACTGGTGCTATTGGCCCAACTGGACCTGCTGGAGCTCGTGGTGCTCCTGGTGACCGTGGTGAGGTTGGACCTCCTGGCCCTGCTGGTTTTGCTGGACCCCCTGGTGCTGATGGCCAGCCCGGATTGAAAGGAGAACAGGGAGAGTCAGGCCAGAAAGGAGATGCTGGATCCCCTGGACCTCAAGGACCCTCTGGAGCACCCGGTCCAGTTGGCCCAACTGGTGTCTCTGGACCTAAAGGAGCCCGCGGAGCACAGGGAGCCCCAGGTGCTACTGGTTTCCCAGGCGCTGCTGGAAGAGTTGGACCACCCGGTCCTAATGGTAACCCTGGCCCTGTTGGTCCTGCTGGTCCTTCTGGTAAAGATGGTCCTAAGGGAGTGCGTGGTGATGCTGGTCCACCAGGAAGACCAGGAGATGCTGGACTGCGTGGACCTCCTGGAACCCCTGGAGAGAAGGGAGAGCCTGGAGAGGATGGCCCCCCTGGTCCTGATGGTCCTACTGGTCCTGCAGGTTTAGCTGGTCAGCGTGGTATTGTTGGTCTGCCTGGTCAGCGTGGTGAGAGAGGTTTCCCTGGCCTTCCAGGACCTTCTGGTGAGCCTGGCAAACAGGGTGCTCCTGGTTCTGGTGGTGAACGTGGACCCCCTGGCCCTGTTGGACCCCCTGGACTGACTGGACCTACTGGAGAACCTGGGCGTGAGGGTAATCCTGGATCTGATGGTCCTCCTGGCCGAGATGGTTCTGCTGGTGTGAAGGGTGAACGTGGTAACACTGGTCCTATTGGTGCTCCTGGTGCTCCTGGTGCCCCTGGTTCTCCTGGTCCCGTTGGTCCTGTAGGCAAACagggagacagaggagagagtGGAGCACAAGGACCTGCTGGACCTCCTGGACCTGCTGGAGCAAGAGGCATGGCTGGACCCCAAGGTCCACGTGGAGACAagggagaggctggtgaagctGGAGAAAGAGGACAGAAGGGACACAGAGGATTCACTGGTCTGCAGGGTCTTCCTGGACCTCCTGGTTCTCCTGGTGACCAGGGTGCTGCTGGACCTAGTGGACCTAGTGGACCTAAGGGACCCCCTGGACCTGTTGGTCCAGCTGGAAAGGATGGCGCGAATGGTATCCCTGGACCCATTGGACCCCCTGGACCACGTGGACGCTCTGGAGAAACTGGCCCAGCTGGTCCTCCTGGTAACCCTGGACCCCCTGGTCCTCCTGGTCCTCCAGGCCCTGGCATTGATATGTCTGCCTTCGCTGGGTTGGGTCAGACTGAGAAGGGCCCCGATCCCCTGCGTTACATGCGTGCTGATGAGGCCTCCAACAATCTGAGACAGCATGATGTGGAGGTTGATGCCACCCTGAAATCCATTAACGGCCAGATTGAGGATATCCGCAGCCCTGATGGATCTCGCAAGAACCCTGCTCGCTCCTGCCGTGACCTGAAACTCTGCCACCCTGATTGGAAGAGCgGTGACTACTGGGTGGATCCTAACCTTGGCTGCACTGCTGATGCCATCAAGGTCTTCTGCAACATGGAGACTGGAGAAACATGTGTGAAGCCCACTACAAGCAGTATCCCACGCAAGAACTGGTGGAGCACCAAGAGCAAGGGTCAGAAGCACGTATGGTTCGGCGAGAACATGGGTGGTGGCTTCCATTTCAGCTATGGTGATATGATGCCAACTCCAAATGTGGCCAGCATTCAGATGAACTTCCTGAGACTGCTATCTAGCGAGGCCTCTCAGAGTATCACCTACCACTGCAAGAACAGCGTGGCCTACATGGATGAGACCACCGGCAACCTGAAGAAGGCTCTTCTGCTGCAGGGCTCCAACGATGTGGAAATCAGAGCAGAGGGTAACAGCCGATTCACATACAGTGTGCTGGAGGATGGCTGCAAGaaacacacaggccAGTGGGGTAAGACTGTGATTGAGTACAAAACTCAGAAGACATCTAGACTGCCCATCGTGGACATTGCTCCTTTGGACATCGGTGGAGCTAATCAGGAGTTTGGAGTGGACATTGGACCAGTCTgtttcttgtaaaaaaaaacaaaaaaaacaaaacaaaacaaatgtggGACACAATATAAGACATGGAAAGATATAAATGATAAGCAATAGCTCCATGAAGAAGCAATACACTCtccaaataaagaaatatggaAGTAAAGGAAAAGGAAACCAAATTGAAAATTGATGAATGCTTTTGTCTCTAACACACAAAAGTTGTGCATTTAGTGCCCTGGAGACCAGCACTAAGCAGCACTGCCCCATGAGTCTCTCCCTCTGAAATCCAGCCATGTTTCCCCTCAAAGCATCCTTCTTTCTGATGGGAGCTGAGACGAGGAAGTAACGAGTGAGCAAGACTAAATGAGTAAGAGATGGAAAGTGCAGAAACATGGCTAGATGTCATCACATACGGCAGGTGGGAGTGGTGCTTTAGAGCTGGGTGCATTTTGGCTGTATACAACAGAAGCCCCTCCCACTAAGACCATCTTGAACCACACCCAGTCCCACTCAGCCCCTCCCTCTGCTTCCTGACTGTGACTCAGTAAAAACATCACATTCTGCTAGGTATTGTGAAATgttaaaactggggagggtgggAGTTAATATTTACTGtgtataataaagtaaaatccTGGTTCAGTTGTTGTAAAAGTCTGTTCTGCAACAGCTAGATCTATATATTTTCACAATTATATGTGTTTGCGTGAGAGAGTGTGTACCTGTGCACACCAAAAACTTTTTTGGGGGAAGTGCAGTTTTtagttttcctttctttttttttttagtgtacttCAGTATTTTCCCCTTGACTGCCCATTTAGGAAGTGTTGTCCCTTTAccaaaaaagcaaaagtaaaataaatttggACGATA
>XM_034306595.1
CATAACTGCACCGGTGGACATAAAACCGCGGAGCTCGCGCTGACGCGGTGGGTGCTGTCTGCGCACAGGGGCCTGGCGTCGGATcccccaaaaaacacacaacactcatCAAAAAGCCAACACACTCCCTGCGATACACTGCAGCTGCAGCTTCGCCGATCTCGGCGAAATCTTTCACTCTGAGGAACTGCATGTCTGACTTTTAGACATGTTCAGATTTGTGGACTCACGGACTGTCCTGCTACTTGTAGCGACACAATGTATTTTGCAAGCCGTTGTCAGATGTCAACGAGAGGATGACCAGACCTTTGGTGCAAAGGGACAAAAAGGAGAACCTGGCGATATTGCAAATgTTCTAGGACCGAGAGGACCGGCTGGCCCCATGGGACCACCTGGAGAGCAGGGACCACGTGGAGAGAGAGGCCCTAAGGGTGAGAAGGGAAGTCCAGGCCCCAGAGGAAGAGACGGCGAGCCCGGCACTCCAGGCAACCCTGGACCTCCCGGACCTCCCGGCCCACCAGGCCCAAACCCACCTGGACTTGGAGGAaaCTTTGCGGCTCAGATGGCTGGAGGTTTTGATGAGAAAGCAGGAGGAGCTAACATGGGTGTGATGCAAGGCCCGATGgGCCCCATGGGTCCCCGTGGTCCCCCTGGTCCCACTGGAGCACCTGGCCCACAAGGGTTCCAAGGCAGCCCGGGAGAAGCTGGCGAACCTGGACCTTCTGGCTCTATGGGACCTCGTGGCCCACCTGGACCACCTGGAAAATCTGGAAGTGATGGTGAGAATGGCAAACCTGGTAAGCCTGGTGACCGTGGACCCACTGGACCTCAGGGAGCTCGTGGATTCCCTGGAACCCCTGGACTTCCTGGCATCAAGGGACACAGAGGACACCCAGGTCTTGATGGCGCCAAGGGAGAGACTGGAGCTGCTGGAGCTAAGGGTGAGTCAGGTGCACCTGGTGAGAATGGCGCCCCTGGACCGATGGGCCCTCGTGGTCTTCCTGGTGAGAGAGGACGCCCTGGACCCTCTGGAGCTGCTGGTGCCCGTGGTAATGATGGTCTTCCTGGGCCTGCTGGTCCTCCTGGTCCTGTTGGTCCTGCTGGTGCCCCAGGTTTCCCAGGAGCCCCTGGTTCTAAGGGTGAGGCCGGACCTACTGGTGCTCGTGGAGCTGAGGGAGCCCAAGGACCCCGTGGAGAGGCTGGCACTCCAGGTTCTCCTGGACCTGCTGGAGCTTCTGGTAACCCTGGTACTGATGGTATTCCTGGAGCTAAAGGATCTGCTGGTGCCCCTGGTATTGCTGGTGCCCCAGGATTCCCAGGACCTCGTGGCCCACCTGGACCTCAGGGAGCTACCGGACCTCTTGGGCCCAAGGGTCAGAGTGGAGACCCTGGTATCCCAGGATTTAAGGGAGAGGCTGGACCAAAAGGAGAGAGGGGTGTTGCAGGACCTCAGGGTGCCCCAGGCCCAATTGGTGAAGAGGGTAAGAGAGGACCTAGAGGAGAGCCCGGTTCTGCTGGCCCTCTTGGACCtccaggagagagaGGAGCTCCAGGTAACCGTGGATTCCCAGGTCAAGATGGTCTTCCTGGTGCTAAGGGTGCTCCTGGTGATCGTGGTGTTTCTGGATTGTCTGGACCAAAAGGGGCTGTTGGAGATCCTGGTCGTCCTGGCGAGCCTGGTCTTCCTGGGGCAAGAGGTCTCACTGGTCGCCCTGGAGATGCTGGACCCCAAGGAAAAGTTGGCCCAACTGGTGCTCCTGGTGAGGACGGTCGTCCTGGTCCCCCTGGGCCTCAGGGAGCTCGTGGACAGCCTGGCGTGATGGGATTCCCCGGACCCAAGGGAGCCAATGGAGAGCCTGGCAAATCTGGAGAGAAAGGACTTGTTGGCAGCCCTGGTCTCAGAGGTTTGCCTGGTAAAGATGGGGAGACTGGAGCTGCTGGTCCTCCTGGCCCTGCTGGACCTGCTGGAGAGAGAGGTGAACAAGGACAGCCTGGTCCTCCTGGCTTCCAGggtTTGCCTGGACCTGGTGGACCACCAGGAGAGGCCGGCAAACCAGGTGACCAGGGTGTTCCTGGAGAGAGTGGTGCCCCTGGTGTGGTTGGACCAAGAGGTGAGCGTGGTTTCCCTGGTGAGAGAGGAAGTGCTGGACCCCAGGGTCTTCAGGGACCCAGAGGCCTTCCTGGAACTCCTGGAACTGATGGACCCAAGGGTGCCATAGGCCCGGCTGGTACTGCTGGTGCCCAGGGTCCTCCTGGTCTGCAGGGTATGCCAGGTGAAAGAGGTTCTGCTGGTATCTCTGGACCTAAGGGTGACAGAGGTGACTCCGGAGAGAAAGGACCTGAGGGAGCTCCTGGCAAAGATGGTGCAAGAGGTTTGACTGGCCCTATTGGTCCACCTGGTCCTTCTGGTCCCAATGGAGCTAAGGGTGAAACTGGTGCTATTGGCCCAACTGGACCTGCTGGAGCTCGTGGTGCTCCTGGTGACCGTGGTGAGGTTGGACCTCCTGGCCCTGCTGGTTTTGCTGGACCCCCTGGTGCTGATGGCCAGCCCGGATTGAAAGGAGAACAGGGAGAGTCAGGCCAGAAAGGAGATGCTGGATCCCCTGGACCTCAAGGACCCTCTGGAGCACCCGGTCCAGTTGGCCCAACTGGTGTCTCTGGACCTAAAGGAGCCCGCGGAGCACAGGGAGCCCCAGGTGCTACTGGTTTCCCAGGCGCTGCTGGAAGAGTTGGACCACCCGGTCCTAATGGTAACCCTGGCCCTGTTGGTCCTGCTGGTCCTTCTGGTAAAGATGGTCCTAAGGGAGTGCGTGGTGATGCTGGTCCACCAGGAAGACCAGGAGATGCTGGACTGCGTGGACCTCCTGGAACCCCTGGAGAGAAGGGAGAGCCTGGAGAGGATGGCCCCCCTGGTCCTGATGGTCCTACTGGTCCTGCAGGTTTAGCTGGTCAGCGTGGTATTGTTGGTCTGCCTGGTCAGCGTGGTGAGAGAGGTTTCCCTGGCCTTCCAGGACCTTCTGGTGAGCCTGGCAAACAGGGTGCTCCTGGTTCTGGTGGTGAACGTGGACCCCCTGGCCCTGTTGGACCCCCTGGACTGACTGGACCTACTGGAGAACCTGGGCGTGAGGGTAATCCTGGATCTGATGGTCCTCCTGGCCGAGATGGTTCTGCTGGTGTGAAGGGTGAACGTGGTAACACTGGTCCTATTGGTGCTCCTGGTGCTCCTGGTGCCCCTGGTTCTCCTGGTCCCGTTGGTCCTGTAGGCAAACagggagacagaggagagagtGGAGCACAAGGACCTGCTGGACCTCCTGGACCTGCTGGAGCAAGAGGCATGGCTGGACCCCAAGGTCCACGTGGAGACAagggagaggctggtgaagctGGAGAAAGAGGACAGAAGGGACACAGAGGATTCACTGGTCTGCAGGGTCTTCCTGGACCTCCTGGTTCTCCTGGTGACCAGGGTGCTGCTGGACCTAGTGGACCTAGTGGACCTAAGGGACCCCCTGGACCTGTTGGTCCAGCTGGAAAGGATGGCGCGAATGGTATCCCTGGACCCATTGGACCCCCTGGACCACGTGGACGCTCTGGAGAAACTGGCCCAGCTGGTCCTCCTGGTAACCCTGGACCCCCTGGTCCTCCTGGTCCTCCAGGCCCTGGCATTGATATGTCTGCCTTCGCTGGGTTGGGTCAGACTGAGAAGGGCCCCGATCCCCTGCGTTACATGCGTGCTGATGAGGCCTCCAACAATCTGAGACAGCATGATGTGGAGGTTGATGCCACCCTGAAATCCATTAACGGCCAGATTGAGGATATCCGCAGCCCTGATGGATCTCGCAAGAACCCTGCTCGCTCCTGCCGTGACCTGAAACTCTGCCACCCTGATTGGAAGAGCgGTGACTACTGGGTGGATCCTAACCTTGGCTGCACTGCTGATGCCATCAAGGTCTTCTGCAACATGGAGACTGGAGAAACATGTGTGAAGCCCACTACAAGCAGTATCCCACGCAAGAACTGGTGGAGCACCAAGAGCAAGGGTCAGAAGCACGTATGGTTCGGCGAGAACATGGGTGGTGGCTTCCATTTCAGCTATGGTGATATGATGCCAACTCCAAATGTGGCCAGCATTCAGATGAACTTCCTGAGACTGCTATCTAGCGAGGCCTCTCAGAGTATCACCTACCACTGCAAGAACAGCGTGGCCTACATGGATGAGACCACCGGCAACCTGAAGAAGGCTCTTCTGCTGCAGGGCTCCAACGATGTGGAAATCAGAGCAGAGGGTAACAGCCGATTCACATACAGTGTGCTGGAGGATGGCTGCAAGaaacacacaggccAGTGGGGTAAGACTGTGATTGAGTACAAAACTCAGAAGACATCTAGACTGCCCATCGTGGACATTGCTCCTTTGGACATCGGTGGAGCTAATCAGGAGTTTGGAGTGGACATTGGACCAGTCTgtttcttgtaaaaaaaaacaaaaaaaacaaaacaaaacaaatgtggGACACAATATAAGACATGGAAAGATATAAATGATAAGCAATAGCTCCATGAAGAAGCAATACACTCtccaaataaagaaatatggaAGTAAAGGAAAAGGAAACCAAATTGAAAATTGATGAATGCTTTTGTCTCTAACACACAAAAGTTGTGCATTTAGTGCCCTGGAGACCAGCACTAAGCAGCACTGCCCCATGAGTCTCTCCCTCTGAAATCCAGCCATGTTTCCCCTCAAAGCATCCTTCTTTCTGATGGGAGCTGAGACGAGGAAGTAACGAGTGAGCAAGACTAAATGAGTAAGAGATGGAAAGTGCAGAAACATGGCTAGATGTCATCACATACGGCAGGTGGGAGTGGTGCTTTAGAGCTGGGTGCATTTTGGCTGTATACAACAGAAGCCCCTCCCACTAAGACCATCTTGAACCACACCCAGTCCCACTCAGCCCCTCCCTCTGCTTCCTGACTGTGACTCAGTAAAAACATCACATTCTGCTAGGTATTGTGAAATgttaaaactggggagggtgggAGTTAATATTTACTGtgtataataaagtaaaatccTGGTTCAGTTGTTGTAAAAGTCTGTTCTGCAACAGCTAGATCTATATATTTTCACAATTATATGTGTTTGCGTGAGAGAGTGTGTACCTGTGCACACCAAAAACTTTTTTGGGGGAAGTGCAGTTTTtagttttcctttctttttttttttagtgtacttCAGTATTTTCCCCTTGACTGCCCATTTAGGAAGTGTTGTCCCTTTAccaaaaaagcaaaagtaaaataaatttggACGATA

Function

symbol description
col2a1a Predicted to be an extracellular matrix structural constituent. Acts upstream of or within axon guidance; embryonic skeletal system development; and notochord development. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including endoderm; fin; floor plate; head; and skeletal system. Human ortholog(s) of this gene implicated in Stickler syndrome (multiple); bone disease (multiple); cleft palate; eye disease (multiple); and multiple epiphyseal dysplasia with myopia and deafness. Orthologous to human COL2A1 (collagen type II alpha 1 chain).

NR:

description
PREDICTED: collagen alpha-1(II) chain-like isoform X3

GO:

id name namespace
GO:0030903 notochord development biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
K19719 COL2A; collagen type II alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306594.1 True 5530 mRNA 0.56 54 11738339 11763591
XM_034306595.1 False 5320 mRNA 0.56 53 11738339 11763591

Neighbor

gene id symbol gene type direction distance location
spryd4 spryd4 coding upstream 21665 11714943 ~ 11716674 (+)
magoh mgn,magoh,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 38971 11696883 ~ 11699368 (+)
LOC113538016 NA coding upstream 129782 11597781 ~ 11608557 (+)
si:ch211-198n5.11 LOC108265604 coding upstream 141726 11588824 ~ 11596613 (+)
cdkn2c cdkn2c coding upstream 290455 11436385 ~ 11447884 (+)
cry3a cry1ba,LOC108265656,LOC108441644,LOC107668038 coding downstream 2449 11766040 ~ 11791173 (+)
itpr3 itpr3,LOC108441646,LOC106572092,LOC107731245 coding downstream 39457 11803048 ~ 11839884 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding downstream 77992 11841583 ~ 11849987 (+)
LOC113530463 LOC108266055 coding downstream 90576 11854167 ~ 11857253 (+)
fhad1 LOC108266054 coding downstream 94877 11858468 ~ 11861880 (+)
G131061 NA non-coding upstream 20454 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 186308 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 378959 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 789993 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 821714 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 453413 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 462561 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 756303 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 926576 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 937121 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 24307 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 41548 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 104495 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 864213 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 996914 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 215595 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 433002 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 836107 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1941575 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 2126813 13890404 ~ 13948808 (+)

Expression


Co-expression Network