LOC113524948


Basic Information

Item Value
gene id LOC113524948
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17037821 ~ 17050280 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306615.1
ATGGCTGCTCGCACATCAGACGCACTTGTGTGTGGAAACTCCACAAGAACAGCATCTGTTAACAAAGTAAAAGAGGGAAAGGCCTTTAGAAAGAGGACTAACATAGATACCCCTTCTCCTTTGCCTTCTCTGCTTCCATCTCTCCATGTCCACTCTGTGGATCTGGAAGtCATTGAGATTGCATCAGGGACTGAAGTTGATGAAGAAATATTCAGTGACCTCATTGGACAAGGCAATGTGGTGTTGAGTGTTTTCTCCAATGATCatttttcagaCTCCTTCTCTTCTGAGATGTCTGACTCCAGCAGTAGCTCAAGTGCATCAACTGTCATCTTAAGTGAAGTCCCTAACAAGAGACAAAGAACTGAGGAGGCAGCATCAGCATCTGCTAAACAGttgaTTGAAGATGTGCTAAAATCCAAGTCTGGTGGTGAAGCAGTAATACAGGAGTATCAAGCAACAGAAACGCTTACAGATGCCACAAGAcgacaaatgataaatatactGGTGGCTCACATGATTGAAACACATGGGCAACTCCCCACTAAAGCAATCAGAGAGCAGTATGCTTTAGGCATAGTGATGTTGTTTCCTTCTCTGAGAGATCCGTATTCCAAGAAAGGCTATGAACACTTCTATGATCCAGCAAGCAACACAGGATATATCGCCTGGCGTATGAAAACGGTCCACCAGAAGATCCGTCGAGGATCTTTGCCACCTGATAGCCCTCTTGATGTTACACCTGGAGGACCAAAAGGCCAAAGGGCTATTAATTTTACAGGGCAACTTCATGGGGATGCTTGCAAAAAAGCCATGTCTTTACTCAATCACACCACAGACAGGTCCCAAATTTttcagaaaatgagagagaccTTTGAACATCGGCAGAAGCTTATCAAAGATCCGGGCTTTACCGTTCATATCCTCTCTACCTTCCCAAGATTTCTGGACACAAAAGGGCTGGTGGAACAAGACTTCACTCTGCTTTTTGATGATGAGACTTCCTCCAGACTGCTTCAGAAGTGGGACATGTTCTTCAAACCAAATGTAATAAAAGAGGCCAAGCGACTGGCTTCAACACCAGAGTTGACACAGTTGTTGCTGTCAGCTGAAACACCTGAAGAAAGTGATCCTGATGAAACAAGAATTCATGACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306615.1 True 1158 mRNA 0.44 9 17037821 17050280

Neighbor

gene id symbol gene type direction distance location
cux2b cux2 coding upstream 459132 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 598737 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 640196 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 662693 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 666080 16355696 ~ 16371741 (+)
LOC117597835 NA coding downstream 10778 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 299036 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 360828 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 561106 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 855524 17905804 ~ 17916639 (+)
G134245 NA non-coding upstream 17925 17019679 ~ 17019896 (+)
G134242 NA non-coding upstream 21287 17016254 ~ 17016534 (+)
G134241 NA non-coding upstream 21765 17015751 ~ 17016056 (+)
G134238 NA non-coding upstream 45854 16991767 ~ 16991967 (+)
LOC113533561 NA non-coding upstream 62884 16951548 ~ 16974937 (+)
G134301 NA non-coding downstream 160672 17210952 ~ 17211186 (+)
G134303 NA non-coding downstream 182895 17233175 ~ 17233424 (+)
G134344 NA non-coding downstream 247888 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding downstream 262619 17312899 ~ 17330663 (+)
LOC117597877 NA non-coding downstream 326023 17376303 ~ 17378236 (+)
gucd1 gucd1,LOC102792582 other upstream 169053 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 299837 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 416055 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 618312 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 1019003 16002061 ~ 16018818 (+)
G134341 NA other downstream 245831 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 980695 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1385905 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2437207 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2775518 19825798 ~ 19902367 (+)

Expression


Co-expression Network