LOC117597773 (grid2,LOC106580171)


Basic Information

Item Value
gene id LOC117597773
gene name grid2,LOC106580171
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14474642 ~ 14483736 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578523.1
ctgcactcacaccagccctttctggataagactGGACAACCCTGAGCTAGAACAACCAAAACCTTAACATAAGGGAATCACCTATAATGCACTTGCAATAGCATCAAGCAAGTGTAAcatatgtaaattttaaataagcACCTGACAAAAAGTTTTGATTGTGTTTACATTCCTCCTGTCACTCATGTTTTACATGTCTCCATTTTTACTGCTCGAAAACAAAGACGTGGAAGAATTTAGTGTTAAATTGCCTGCTTTACCAGTTACTGTTATGTGGGAAAAACCTGCTGACTACAAAGGGGATGCAGCTGGATTCCGAATAATTTCTCCCAGACAGGCCTTGGCACTTGCAGGACTCATGAAGAGAACGGCTCGGCGCAGTGTGTCCCTGTAGCGGTGCAACTCTTCCATCCTCATGGTGCGGAACATCCCGGTGATCATCATGTTGATGTTCGACTCCACCTTCTGCAGGGAAACGTCCATCCCCTGCTGAGATGACTTGTCCAGAAAGTCCTGGATCCCCCGGATATCTAGACATGCATAAAAAATGATGTCACCACAGTTACATTTCATACTCAAAGTGAGCCTTTCAAGCATTTTATTGAAATGGAATATGTGCAGTAAAGTGAATATATGTTCCACACAAATAAATGTATCACAAACA

Function

symbol description
grid2 Predicted to enable ionotropic glutamate receptor activity and transmitter-gated ion channel activity involved in regulation of postsynaptic membrane potential. Predicted to be involved in glutamatergic synaptic transmission and modulation of chemical synaptic transmission. Predicted to act upstream of or within ionotropic glutamate receptor signaling pathway. Predicted to be integral component of plasma membrane. Predicted to be active in postsynaptic membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 18. Orthologous to human GRID2 (glutamate ionotropic receptor delta type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, delta-2

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578523.1 True 664 lncRNA 0.42 2 14474642 14483736

Neighbor

gene id symbol gene type direction distance location
prf1.5 LOC108265013 coding upstream 195361 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 205213 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 242513 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 302849 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 588975 13879111 ~ 13885667 (+)
ap3s1 ap3s1 coding downstream 437407 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 593934 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 651950 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 673103 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 681909 15165645 ~ 15174722 (+)
G132603 NA non-coding upstream 146773 14327652 ~ 14327869 (+)
G132569 NA non-coding upstream 213987 14260279 ~ 14260655 (+)
G132424 NA non-coding upstream 224827 14249122 ~ 14249815 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding upstream 228508 14245576 ~ 14246134 (+)
G132405 LOC108265425 non-coding upstream 240388 14233028 ~ 14234254 (+)
LOC113529916 NA non-coding downstream 238694 14722430 ~ 14740962 (+)
G132959 NA non-coding downstream 258746 14742482 ~ 14744146 (+)
G132968 trim36 non-coding downstream 338246 14821982 ~ 14824363 (+)
G133220 NA non-coding downstream 725779 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 815448 15299184 ~ 15299387 (+)
G132595 atoh1 other upstream 151192 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 451955 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 525834 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 683325 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1869937 12599698 ~ 12604705 (+)
commd10 commd10 other downstream 456565 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 496097 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 895206 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1518325 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1919012 16402748 ~ 16419509 (+)

Expression


Co-expression Network