G178057


Basic Information

Item Value
gene id G178057
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8323619 ~ 8324164 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU210754
CCCAAATCAGAAAAAGTTGGGACAGTatggaaaacacaaataaaaaaagaaagtagtgATTTCTAAATTTACTTTGACTTGTATTTCATTGCAGACAATACAACAGcacattatttaatgtgttcctcatgatttttattgttttttcttcaaaaaaacaaaattcctATTTTGGTTCTTGcaacacatttcaaaaaaagTTGGAACAGTAAAGCATTTACCACTTTGTAATGTTGCCATGCCTTTTCACAACACTTAAAAGACGTTTAGGGACTGAAGACACCAAGTGAAGAAGTGTTTCAGGTGTAATTTTGTCCCATTCTTGCTGTAAACAAGTCTTAAGGTGGGCAAAAGTACGGGGTCTTCGTTGTCGCATTTTGCGCTTCAAAATGCGCCACACATTCTCTGTTGGAGACAGGTCGGGACTGCAGGCAGGCCAGTCAAGTACCTGTATCCTCTTCCTCCGCAGCCAGGACTTTGTAATGTGTGCAGAATGTGGTTTTGCATTATCTTGTTGAAATATGCATGGACGTCCCTGAAAAAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210754 True 546 lncRNA 0.38 1 8323619 8324164

Neighbor

gene id symbol gene type direction distance location
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding downstream 11125 8307279 ~ 8312494 (-)
trnar-acg_5 NA coding downstream 80816 8242731 ~ 8242803 (-)
trnar-acg_4 NA coding downstream 81441 8242106 ~ 8242178 (-)
mrpl46 mrpl46 coding downstream 142968 8173261 ~ 8180651 (-)
ntrk3b ntrk3,ntrk3b,LOC107733954 coding downstream 198834 7992004 ~ 8124785 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding upstream 5924 8330088 ~ 8366987 (-)
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding upstream 49331 8373495 ~ 8451252 (-)
LOC113536763 LOC108270703 coding upstream 128840 8453004 ~ 8469432 (-)
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding upstream 167088 8491252 ~ 8508330 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding upstream 198444 8522608 ~ 8529443 (-)
LOC113536653 NA non-coding downstream 48259 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 396561 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 568601 7707511 ~ 7755018 (-)
G177733 NA non-coding downstream 572813 7728913 ~ 7750806 (-)
G177691 NA non-coding downstream 771869 7551522 ~ 7551750 (-)
G178208 NA non-coding upstream 197637 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 269022 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 387013 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 679480 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 862907 9187071 ~ 9189914 (-)
trnar-acg_8 NA other downstream 75857 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 76844 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 78898 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 559189 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 734804 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 659018 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 996802 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 1063327 9387491 ~ 9407218 (-)
G178942 NA other upstream 1198252 9522416 ~ 9523330 (-)
G179035 NA other upstream 1489728 9813892 ~ 9815225 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G442415 NA non-coding CI01000311 null 1101604 ~ 1124087 (+)