LOC113536763 (LOC108270703)


Basic Information

Item Value
gene id LOC113536763
gene name LOC108270703
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 8453004 ~ 8469432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930902.2
ATGGCGCTGAAACCTGAAGCGCTGGCTGAAGCTCCAATTGAGCTGAAGGAAGAACCGATCGAAAAAGTGACACTCTCTGGCAGGACAGAAGAGAGGGAAAGCAAGAGACAGAGGCAGACTGATGCAAAGGAGACATTTGTGCTCTTTAATCAAAGTGTAGTAGGTTTTACCTCCAAATATCGTATTgcaggaaataaaaagaaggaCCAGAGAGAAGCAGTTCTGAAAGAGTTGGTTGAGATATGGCGGAAGGGTGGAGGCTGGTACCCCCGCAGAGAACAGCCATCTCCAGAGAGAGGACAGGATGAACAAATCCATACAGTCCTAAGGAACATTGTTGGAGGTCTCAAGTCTCTAGGACTCCTTCCCAAGAAAGCTATTGGTTTACCATCTCTTAACAAGCCACTTGACCGGAACAGGCTGTCAGGATTTCTTTATAACATCTCAATGTATCTTCAGGAAATGAGTGCTGAACTAGATGATGATATATCTTTCAGCGATGATCATTTTTGGGAAAACTTGCTGCATTCTTTTCTCCAGTCTGATGGAAAAATACCACTAGAAGATTGGGCTGGGAGGGTTCCTCCTAGACCAAGCTTCAGGCTACAAGACCTCTTCCTCTCTCTAAGAGGCAGCCCACATTGGGATGGACTACTTGGACTGGTGCAGAGCATCCTTACACTCATAGAACAGCAGCCGCAAAGACCTCTTCTCACATTTGTGTCGCAGAACTGGAAGACCATCAGTGCCTTGCTTGACACTGCTCTACAAGCTCTTGTCAGTGGGACCTATAGCCAGGCCAATGCAGGTCTCCAGGGATTTATCTGTGTCCTGAAAGGGCAAAGTGATTGTGCTTTCAACCTGAGCTGGCTGCAGCAACTCCTGACGTTCCTGGAGGCAAGGAACTGGAAACCTATGGTTAATCTGCACCCTGCAGGTGTAGCCAGTGACCACAGAGACAGTAACTTCTTGGCAGGACGTTTTAAGCCATTTAGCATTCCACCTGAGATTTTACGTGAGGTGAACAATAAATCTCAAGATATAGACAGCCTTAGCATTGTGCAAGCCCTACTTCTGCAGGCCCTGTCAAAGTCAAACAGTGGAGAAAGAGCAGTACAGTTTGCTGAGCGTAATCCTGCCCTTGTCCAGGGTCTTGATGGCCTCCGACGTGGATTCCTGCACAGAGTGGGTAGCACGGTGTACAGTAATCTGAGGAGGAAGGTGTCGCGTGTGACCATAGCACTGCTGGATGATCTAGGTAGCATGGCTGGTGAGCCACAGTCCACTCAACTGGGAAAATGTTCTGTAGgtGACCTGAGACAGTTGATATTGTgGGGGATTAGACATAATCTGACATGGAATGCTCAAGCCATGGGTTTCACCTCACATGGTTTACCGAGTCGGCCATCTTTGATGTCCTGTTCATcttcagagacagaaaaacacaactcGAAACAACAGCAATCATCAAAAAGATCCAGCCTCCTCCAGCCTCATCCATTGTTCCATAATCAAACAGAATCAGAGCTGCCAGCCTCAGCAGAGATCCTGGAAGCAGCATGCAATGCCTCTATTCCAGGTCTCACTGGTGTTTCAAACTTTACCGTGTTTCTCTACTGTAATCTTTTTGATGGAGCTGATGAAACATTGGACCCGGAGGCTGGTCATGTAGTGCCTGACCTGCATGTCAGCTGTTCTAATGCGGCATGGTACCTCTCTGCTGCAGAGGAAGATTTCCTGTGGGTACATGTGTGCAGTGAATTCTTCGCACAAGATTTCAATAATACAGTATGTGCCAACTCTTCCTTCTGGCTACAGCGAGCCCATCAGGCTGCCGTTACCAAGGACTACCATTACCTCAACCAATCAAGTATTGATGACCTCTGCATACAACTCTCCAGTGAAGTTGCTGGCAGTTCTACAAGTATTGCAACTGAGGACTGCTTAGAACTGCTCAGTGCTAGATCTCTAAGTGCACAAGATTTCAGGAGGTGTTTTCTACCTAACAACTCCGCTCTGATATTAGCCTTGTGTGGCAATGTGTCATATCCATTAGTTCACACTGGCTGGGCTGCAGAATATTGCTCCAAAATCCTGAACAAAGATTCCCACCATGACTCCAAAAATGTTctctgtgactttttaaattggACTGCAGAGCATTTCACCAACTCTGATCTGCTTGAACTCTGTGGAGACACTGCAGGGCTGAGGGATTATATCTGCAAGAACATGAGCCTGTACGTCATGCTGGTTCCTAAACAGCCTGTACTCTTAGACTACTGCAACTCCATATCAGAACTGAAGCAGGAGACCCAGTGTGTCCTCCAGCAGCTGTTTAACATGCTGCCTGCCCCGTATGACTTTGACACTCATCAGCTCTGTATAAATCCTATTCCCATCCTACAGGAAGCTGTGTATAAATTAAACCATTGTGAGGGTGTTGTTGATGAACGTGTGGGCTGGCTGGCCACCGTAAGCTATGTGCTCCAAGTGTTAGATTTTGTTGTGGGGCTCTCAGCAGGCCTTGAAGAAGGGGAACGGGAGGTGCGCCAGGGCCTCGGCCAAGCTATTCTTCTGTCCAGACTTCTGGACAATTCCTCTTTCTGGGGTACCCTCAGGCCTGATGCATCCGTTAGTGTGCTCCAAACTGTTGGTGTCTTTCTCAGACGAGAGCAGAATCTATCTCTTAAGGAAGAACTTCTTAGTTGTTTTAGTCCTGTCCTTTGGGATCTCATTCAAAAAGAGGACAACTCCTCTGCACTGAGATTTTTAATACAGGAATACCTCCAGATGCCGAGAGAAAGAATACGCACCCTTGTGCTGTCTGCAGAAAAAGATGCAGTGAAAAGATTTCTGTCTCATGTACATCAGAGCTGGGACCAGCTCCAAGTGGAGACAACGCAGGCTTCCCCAAAGGAAAAGGAGGCCATGGAGACTATGACTGCTGCCTTCATCCACAAATTCCCACGTGTTACGCCAGAGCTATTTGTCGACCTCTCACAGTTCATCCCGTATATGTCTGTATCTGACATAATGAATTTTCCTGCATCACTGATTGCCAACGATAGTGTGTTGATGGCTATTCGAGATCACAGCTCGGAGATGAAGTCTCCTCAGAAACAAGCTTTCGCAAAACGTCTCCTACAGTCGAATGCAGTAGGGGATGTTTCCTCTTGGCCACCATACTTCCTCACCTCTGTTCTTCCCCTTCTCCCACATCTTCCTGTCAGCCACTTCCAACAGCTGACATCCCAGCAGCTCAGCCCGCTGGTCGAACTGTTGGCTAACAGCAGTCTGGATGCCATAAGGGGGAGACATGTGCTTCGCACCCTGTTCAGCAAGAGGAAGAATCTCACAAGTGATACGATAATGAGGTTAGGCATCCTAATATGCTACGTGAATTCAGAGGAACTGCATCGTTTCCTTTCTATACCACCTGTCTCGCCTCTTCTGTGGCAGCAGCTGGCACAGTGTATTTCAGATGGTCATGTCAGTGGAAACGGCAGACTTTCCCACTGGCTGGCCCTTTCTCTCAAACCCCTTAATGCCAGCTCGTTGTCTTCTCCGGCACTGGCCTCTCTCCATGGTGTATTACCCCAACTTGGCTCATCATTCCTGCAACCATTATCCTCAAATGATTTATTGGAACTCTTCTCTCAGCCTGATATACCTACTTTCCCACCCgcacagGCGTTccaaattttaaacaaaatattccGAGAAACAAATATCAGTGCCAACACACTGTGCAAGCTAAAGCCATTATTTCAGGGTTTAGCTCCTGCTTTCTTAAAAAACTTGACTGTACCTGACTCGATGGGAATGGCAGATTGTCAGTGCTGGAGCTCTCTGCTGAGCGACCTACAGCCTGCACATCGTGCAATGGTGCATAGCGCACTACAACAGCTTCTGGAGCATTTGTCGACCAATAAGACACTCTACCTGCACTGTCTTTTACCCTTCATTTCCCTGAAAAAACTGGCCACTGAGCTTGATGGACAGACGATCCTTCATCACATTCCTCTGTACAGAAACATGTCTTGGTCACCTCAACAGGCTCAGTTGCTTTACAGAATGATTCAGCAAGCTGAAAACGTCACCCGAGATACAGTACTACATTTAGGCCGCATTGCAAGTGGGATGAGCTGTAAAAGCCTACAGCTTTGGGCCAATGATTCAGACTTTTCTGAACTGTTACGGTTTATTACAGCACTGCCCGGCAGATTGAGGCCAGCTCTGAGGAAGTGTGTGGTAGAGGAACTTAGAAAAAGGCCAGATGTGGATCTGGATGGCTTCGACCCATCATTCGCTGCAGGATTACCCGTGACGATGATTGAGCGCCTGTCCAACGCATCACTCTCGGCCGTCCTGAACCACCTTCGAAGACACTTTATTGATTTCCTGGAGCTTCCACGACATAAGCAGATGACCTTGGCTGAGAAAGCCATCGATGTGCTTATGATTGCTGAGGACAGACTCTCCGGGGCGTCCATGGACCTGCTGGgtcctcttctcttcttcctggACAGGGACATGTTGTCTCAGGTGGACAGAGAGGCTCTGAAGCTGCGCCTCGAGGACCTGAAACAGTACTGCATGCCCTCTGATACCTTCAGAGAAATGGCTTCTCTGCTTACAGAGAGAAGTATGCTAGGAGAGCCAAAGTCATGGACAGTAGGAGATGTTGAGCATGTAGACCGGCTAGTGTTCACCCTGTCACCTCAACTGTTGCGCTCTCTACAACTGGATGACTTAGATAAAGACACAGTTGAGCAAGTCCTGCAAAGTCAGTGGCATTGGAAAGACACAGAGCTTGGTAAAGTGTGTGCGGACCCCAAAGGACTAAAAGACAAGATTTACAGCTTAATTCACAAAATAATCAGAGGACGGAGGTGGAGCAGAAGAGAGCCAATCCCGATTTGTGCGGATATCAAAGGGACGTTTCCCTCAGCATGGCGTTGGTACCAGCTCAATCgaatgaagagaaaagaaatgaaggagTGTGTTGAGTTCCTGGGTCAGGATGGTTCTCTTGATGCTGAGCAACGCTGGGCACTGTGGACAGAACTCAGACCGgTTTATAAGCCAGTGAGGACACTCAGGCCAGAGCAGATACTGGAGCTGGGCTGTATCATCACtgagatgagtgagagagagctgcAGGCTGTGAACCTGTCTGACTTAGCTGTGGTGGCTCATGTTGGAAGCTTTAAAGCGTGGAACCCAAGAAaaATGAGAGCGGCTCTACAGGGATTCCTGCGACGCCGCAAAGAGAAGCCTGAAGACCTTGGAGTGGTCGAGTTGGTTTCTCTTGGCAATCTACTTTGTGGCTTCACTCCCACAGAAATTTCCCGTCTAGACCCATTTAACCTGAGCATGGCTGCGATGTTCCTGAGGGAGACGTTCCTGTCATGCTCTGAGCACCAAACTGAGGCTCTGACCGCTCGACTCTCCAGCCCTCTGGCCTTCGGTCCTGTCAGTGGCTGGAGCTCTGAGATTTTCACTGAGATTGGGACTCTGGCAGctGGACTGGATGACATAGTGTTGTCATCCCTCGTGAGGGAACAAATAGAAGGGCTGACTCCATTAGCAATATCCCTGATACCCCCAAAAAAGATGGCTGTGGTGTTCAGTGCAAGTCAGCTGTCCTGGCTGAGCTCTGAACAAGCGTGGGCTGTGACAGACGAGCAGTGGCAAAAGCTGGACAATGAGCAGAAACAAGCACTAAGCATGGCACTGTATGAAGGGGATGTGATGCTTGGACACAGAGGAAGGAACCAGGCTCCCTCAGTTTGGTTTGCTGACAACCTCAAAGCATGCACACTCTTGTTACTCTGTACTCTGTTGCATTTATTATAACCACCCATGGGAGTGTTACTCTTTCATATTTATTTGCTGTACTTTATTaaattcttactttttttttattaaaaaccaaCTTCAGAAAAACAGTATGGGCTTTGATATTGTTCTCatgtttcatttccttttcttttttttccac

Function

GO: NA

KEGG:

id description
K24636 STRC; stereocilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930902.2 True 6007 mRNA 0.48 29 8453004 8469432

Neighbor

gene id symbol gene type direction distance location
furina furina,LOC108270701,LOC108428498,LOC107737005,LOC107733942,LOC107685214,LOC107662279 coding downstream 1752 8373495 ~ 8451252 (-)
fes fes,LOC107733944,LOC107685217,LOC107600721,LOC107594730 coding downstream 86017 8330088 ~ 8366987 (-)
LOC113536672 LOC108271109,LOC107733936,LOC107662287,LOC107594765,LOC107600722,LOC107685235 coding downstream 140510 8307279 ~ 8312494 (-)
trnar-acg_5 NA coding downstream 210201 8242731 ~ 8242803 (-)
trnar-acg_4 NA coding downstream 210826 8242106 ~ 8242178 (-)
abhd2a abhd2a,LOC108270704,LOC108428500,LOC107733946,LOC107685211,LOC107662289,LOC107737001 coding upstream 21820 8491252 ~ 8508330 (-)
rasl12 rasl12,LOC107600716,LOC107737003,LOC107685213 coding upstream 53176 8522608 ~ 8529443 (-)
ubap1lb ubap1l coding upstream 65536 8534968 ~ 8543975 (-)
pdcd7 pdcd7 coding upstream 75510 8544942 ~ 8549611 (-)
clpxa clpx,clpxa,LOC107733949,LOC107737000,LOC107594724,LOC107600713 coding upstream 80936 8550368 ~ 8564908 (-)
G178057 NA non-coding downstream 128840 8323619 ~ 8324164 (-)
LOC113536653 NA non-coding downstream 177644 8271107 ~ 8275360 (-)
G177807 NA non-coding downstream 525946 7926293 ~ 7927058 (-)
G177729 NA non-coding downstream 697986 7707511 ~ 7755018 (-)
G178208 NA non-coding upstream 52369 8521801 ~ 8522085 (-)
G178227 NA non-coding upstream 123754 8593186 ~ 8593405 (-)
G178398 NA non-coding upstream 241745 8711177 ~ 8712118 (-)
G178501 NA non-coding upstream 534212 9003644 ~ 9003852 (-)
G178673 NA non-coding upstream 717639 9187071 ~ 9189914 (-)
trnar-acg_8 NA other downstream 205242 8247690 ~ 8247762 (-)
trnar-acg_7 NA other downstream 206229 8246703 ~ 8246775 (-)
trnar-ucg_7 NA other downstream 208283 8244649 ~ 8244721 (-)
igf1rb LOC108271091 other downstream 688574 7675916 ~ 7764430 (-)
si:ch1073-365p7.2 NA other downstream 864189 7580434 ~ 7588815 (-)
asb7 asb7,LOC107755647,LOC107662256,LOC107742335 other upstream 513750 8983182 ~ 8995120 (-)
mthfs mthfs,LOC102796869 other upstream 851534 9320966 ~ 9336186 (-)
LOC113536412 NA other upstream 918059 9387491 ~ 9407218 (-)
G178942 NA other upstream 1052984 9522416 ~ 9523330 (-)
G179035 NA other upstream 1344460 9813892 ~ 9815225 (-)

Expression


Co-expression Network