G187350


Basic Information

Item Value
gene id G187350
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 24525684 ~ 24552332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU221775
tttaattagaaacacTTCATTAAGCAATAGaaccagcaccaacaacagcaatTAGAACACTGGTGAAGACTTATTGCACCATCATCCTATACTGTTCTATGTGGAGAGTGGAAGTTTGGTCATTCAATATAACAGCAATGCAACAAAGTTACTTTTCTTTTACATATAACTACGATCATCTTTATAACTTAGTGTGAAGAAAAAATACAGGTACAGAATGCACACAACGTGGCTAGAGAAAGCTGGCAGACATTAGAAAAGGGGAGAAATCCTCATGATCTATAAAGAATGCAAGAAAAGAACATTGTTTCTCTAAACCCACTGAGAAGATGGGTAATGTTTATAATCGTTCCCTTTATATTTGAGACAACTTGTAGAGTCAAACCAGTAAGGCATCTTCCTGAGACTACAGATCTAAATGTATCTTTACAGTTTATGCCAACATTACAAACTGAAGTTGCCTTGAAATGTACGATTCTAATCTTGCATGTACCTGAGTAAATATATACTACCCTATTCTATTGTCGCGTTAATGAGAATTACACAAGTACTTCCACACATGAAGCTTTAGAGAagttaaatttcatttttcaccCTCAAagctataaatgaataagttcAAACATCACAGAAAGCAAAATGAGCAAACCTTGTAGGGGAGTTTATTAATCTTGTCTGTACTTAGAAATGTGTAGCTGCACTTTCCTTGTTTAAAGTGTAGGAGAGCACCATTATTCACTGGTCTAAATTCTATTAAAACTATCAGGAGCTTAAATCTTAATAAGAGCACtatcaataaacacaaacaggcaACTGGTATAGCTAACTTTAACAATGACTACATAATATATAGACAGTGCTGGTAACATCCTACTATATTCTCTGGCTGTTGTACACAATTCACAGTTCTCCGTGTCTACTTCACAGAGAACATATCGTTATGCACTTCTAATTTATAACACGCTGTAGTCTATTCAACATCAATGTGAGGATAAAGTTTGGGCGAGAACACAAAAGTAGTTAGGAACCAGCTCTCGTTTGTTAGCGACGTTAGCCTCAAATATGGCCAACGATGCTTTCTCCAGCCCCTTTTCTAATTATACTAAAATCTCTGAATTCTTTCTCATACCAGACAACAGGCTCACACTCTGGAATGTTAAGAGAGCTGCTATAATGTCCTGGGATAGGTGTTTCTCTTCTTATGGACTAAACAGATTCACAAAAAAGTTGTATTTGAGTGATCCCATGACACCAGTAACAGTCTCTGCACACTTAAAGTCAGGCTGAGCGATATGATtttatatcaatatcatgataaactGTCACACTTTTGAGGTATTGCAGATACTGTGATCTATTTTGATCaactaatgaatttatttatttattttttttaactacaaactgactggatgttgctgatttttttgtcaatttgttaaatatacacacacacacacacacacacacacacgagtgttGCAAGCAGGAAAAActggcaagcataaggatctgagcgactttgacaaggtcCAAACTGTGATGGttccacatcaggttcctctctgaatctgaggctgtcatgagcacagactcacccaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221775 True 1604 lncRNA 0.36 3 24525684 24552332

Neighbor

gene id symbol gene type direction distance location
atp8b3 LOC108270636,LOC108438759 coding downstream 95152 24387757 ~ 24430532 (-)
LOC113547068 NA coding downstream 285439 24232274 ~ 24240245 (-)
LOC113527029 NA coding downstream 430440 24062307 ~ 24095244 (-)
LOC113527035 NA coding downstream 467988 24045733 ~ 24057696 (-)
LOC113535590 NA coding downstream 490529 24013690 ~ 24035155 (-)
org LOC108270831 coding upstream 22255 24574587 ~ 24576632 (-)
ell ell coding upstream 38732 24591064 ~ 24630446 (-)
fkbp8 fkbp8,LOC107719572,LOC107676977,LOC107699404,LOC107586436 coding upstream 80399 24632731 ~ 24646771 (-)
shc2 shc2,LOC108439270,LOC107586398,LOC107729700 coding upstream 153116 24705448 ~ 24724292 (-)
rex1bd c10h19orf60,clg08h19orf60,cssa23h19orf60,LOC108439285,LOC103025814,LOC107729673,LOC107676986,LOC107593355 coding upstream 178881 24731213 ~ 24739296 (-)
LOC117598417 NA non-coding downstream 101189 24417081 ~ 24424495 (-)
G187228 NA non-coding downstream 120140 24405296 ~ 24405544 (-)
G187066 dennd1b non-coding downstream 204352 23923137 ~ 24321332 (-)
G187125 NA non-coding downstream 331367 24153156 ~ 24194317 (-)
G187127 NA non-coding downstream 331878 24153473 ~ 24193806 (-)
G187381 NA non-coding upstream 58003 24610335 ~ 24611695 (-)
G187391 NA non-coding upstream 119594 24671926 ~ 24672131 (-)
G187500 NA non-coding upstream 378502 24930834 ~ 24931392 (-)
G187501 NA non-coding upstream 380010 24932342 ~ 24932582 (-)
G187506 NA non-coding upstream 386880 24939212 ~ 24939561 (-)
lingo3a lingo3,lingo3a,LOC108270778,LOC108438765,LOC107596880,LOC107655199,LOC107719577 other downstream 22316 24484772 ~ 24503368 (-)
c11h1orf53 NA other downstream 697593 23816527 ~ 23828091 (-)
ptprc NA other downstream 841673 23652850 ~ 23684011 (-)
LOC117598437 LOC108191637,LOC107104758 other downstream 2529529 21995148 ~ 21996155 (-)
cntnap5l LOC108270728,LOC108439930 other downstream 2630278 21799146 ~ 21895406 (-)
katnb1 katnb1,LOC107596504,LOC108411466,LOC107753522 other upstream 216596 24768928 ~ 24788894 (-)
G187530 NA other upstream 436661 24988993 ~ 24989258 (-)
G187532 NA other upstream 438065 24990397 ~ 24991260 (-)
gtf2a2 gtf2a2,LOC106531147 other upstream 548788 25101120 ~ 25103731 (-)
lrp4 lrp4,LOC106587054 other upstream 1194361 25746693 ~ 25813453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G47666 NA unknown CM030125.1 CM030125.1 46871869 ~ 46875370 (-)
mexican tetra (Astyanax mexicanus) G44062 NA non-coding NC_035901.1 CM008304.1 20113641 ~ 20173258 (+)