LOC113536600


Basic Information

Item Value
gene id LOC113536600
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 10594672 ~ 10597238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930644.2
CACAGATCTGGGCAAGTGATTGCCTCAGacttccttttttgttttgttgtgtattGTTTTGGTTTCAAAACCATTCTCTGGGTGTTGCAGGACATCTGATGAACTTAAAAGGAGCTAGTATAAATACAGCAGGGAggcagtgacagagagacagacagactgagacagagagagagacagacagagtgaaacagagagagtgatggaggaCCAAAAGTGGATGAGTACGTTTAGGACGAGAGCAGTAGATCTGCAGGACgagtggacgctccacatggATGACTCCATCAAGCCAAAAAATGCAGGACCGGGGTTCTTTGAGTACCTGAGAGGATCATTCGCTGAGTTTCGGTGTTCTGGATGTGGTCGTTCATGGCCGTCAAAGCGAGTACAGGTGGTGTTTCATTTCTCACGTGATGTTACCAGTGGGCGTGGCATTGTAAAGGTGCGCCGCTGTAAGCAAGAGTGTCGCCGCTGCAGTGTTCCCCAGAAGGAGAAGCCAAAATTTAGTCAAGAGAACATTGACGTGATGGTGGAGAAACTGATAGAGAAGATTAAACTCAAATGCTACGGGGAGCAAGTGGGAGAATCAGCCCGACCCTTATACGTTATGGGTGAAGTGAATGGACCACATGAAAGCGCACACTGTGAGGCCTGTCAGCTGGGGATCTGCCAACAGGCTACATTAACCACACAACTGCCCCAGCTGAGCGTCAGTGCTACTATTGTACCCACTGGCAGGGTAGTGCACTGACATCTCCAAACACACCCCTACCCTAACACCACCCCCAAATTACCCCCACGCACGGGATTGTTTAATTTCAAGACTGtgcaatgtttatttaat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05323 Rheumatoid arthritis
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930644.2 True 847 mRNA 0.48 3 10594672 10597238

Neighbor

gene id symbol gene type direction distance location
LOC113536758 LOC108270621,LOC108410683,LOC101070468,LOC103028064 coding downstream 1708 10580693 ~ 10592964 (-)
rnf13 rnf13 coding downstream 39474 10544767 ~ 10555198 (-)
LOC113536710 NA coding downstream 64301 10527033 ~ 10530371 (-)
adamtsl3 adamtsl3,LOC107591308,LOC107736989,LOC107685222,LOC107662271 coding downstream 141901 10258307 ~ 10452771 (-)
efl1 efl1,eftud1 coding downstream 343332 10114083 ~ 10251340 (-)
nmur1a LOC108270657 coding upstream 26051 10623289 ~ 10635357 (-)
hykk.2 hykk coding upstream 41783 10639021 ~ 10644194 (-)
mfsd8l1 LOC108271204 coding upstream 498889 11096127 ~ 11108565 (-)
polr2h polr2h coding upstream 513307 11110545 ~ 11113589 (-)
LOC113536755 acap2 coding upstream 598801 11196039 ~ 11237809 (-)
G179487 NA non-coding downstream 15212 10578420 ~ 10579460 (-)
G179485 NA non-coding downstream 18640 10574536 ~ 10576032 (-)
G179478 NA non-coding downstream 31220 10561403 ~ 10563452 (-)
G179469 NA non-coding downstream 79471 10514696 ~ 10515201 (-)
G179466 NA non-coding downstream 82648 10511621 ~ 10512024 (-)
G179727 NA non-coding upstream 597199 11194437 ~ 11195673 (-)
G179827 ttc14 non-coding upstream 961681 11558919 ~ 11562343 (-)
G179972 NA non-coding upstream 1131039 11728277 ~ 11777745 (-)
G180111 NA non-coding upstream 1398932 11996170 ~ 11996383 (-)
G180127 NA non-coding upstream 1456043 12053281 ~ 12054861 (-)
sh3gl3a sh3gl3a,LOC108271217,LOC108439633,LOC107709492,LOC107685195,LOC107591296 other downstream 71093 10486735 ~ 10523579 (-)
G179035 NA other downstream 779447 9813892 ~ 9815225 (-)
G178942 NA other downstream 1071342 9522416 ~ 9523330 (-)
LOC113536412 NA other downstream 1187454 9387491 ~ 9407218 (-)
mthfs mthfs,LOC102796869 other downstream 1258486 9320966 ~ 9336186 (-)
LOC113536673 NA other upstream 8273 10605511 ~ 10695119 (-)
nppc anfc4 other upstream 646609 11243847 ~ 11246310 (-)
G179803 ncl other upstream 811854 11409092 ~ 11420046 (-)
LOC117598430 NA other upstream 894469 11491707 ~ 11503962 (-)
LOC113536577 NA other upstream 913608 11510846 ~ 11518394 (-)

Expression


Co-expression Network