blcap (blcap,bc10)


Basic Information

Item Value
gene id blcap
gene name blcap,bc10
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5956639 ~ 5965183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU26606
CCTTATTCCCTTCACTCTGCCCCCACCTCGGTtcagagattaaaaaacatggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGctGCGCAGAGCCGATCACTTCAGCATGAACCGCAGCGATTACGTGTATGATGGAGAGAATTATAATCAGGCATTTTGTAGGGCACGCGGCTGTTGGGGTCCTTGACTGCTCGCTAAAACTAAACAGCCCTATGTGAGGAGCAGTGGAGTTCGTGTGGGTGAGAGCACGCTGTTCAGTACGAAGAATGTCAgGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCAT
>TU26607
CCTTATTCCCTTCACTCTGCCCCCACCTCGGTtcagagattaaaaaacatggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGctGCGCAGAGCCGATCACTTCAGCATGAACCGCAGCGATTACGTGTATGATGGAGAGAATTATAATCAGGCATTTTGTAGGGCACGCGGCTGTTGGGGTCCTTGACTGCTCGCTAAAACTAAACAGCCCTATGTGAGGAGCAGTGGAGTTCGTGTGGGTGAGAGCACGCTGTTCAGTACGAAGAATGTCAgGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCATAATGCGCAAATTTTCTGAGTTCTATAGATGCTGGAACAACGGCAAGAGTGGCACAGGAAGGGGACACCTGGAGTTTGGGTTTGACCATATGTTtgttcactgtcactgaaatCCTACTCAGTCAACACAcccaaaacatgaaaatgtctACATGCAttatgtagatttatttttgtttgaccAAATTATGAACAAgtacactgcttttttttttttttttttttttttagttaaaccAAAGCACACTTAAATCCTCTGGCATTCTGAAACATTCCAGTTCTAATGTAACAAATCGGTTAACAAACGGTTATCAAAATATTATGCCCAAGCAGAGTGGAATGATTCTGCTCATAATCGTTAATGCTTTCTCATACAGAATAGCAGGCA
>TU26608
CCTTATTCCCTTCACTCTGCCCCCACCTCGGTtcagagattaaaaaacatggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGGGCACGCGGCTGTTGGGGTCCTTGACTGCTCGCTAAAACTAAACAGCCCTATGTGAGGAGCAGTGGAGTTCGTGTGGGTGAGAGCACGCTGTTCAGTACGAAGAATGTCAgGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCAT
>XM_026920539.2
catggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGctGCGCAGAGCCGATCACTTCAGCATGAACCGCAGCGATTACGTGTATGATGGAGAGAATTATAATCAGGCATTTTGTAGGGCACGCGGCTGTTGGGGTCCTTGACTGCTCGCTAAAACTAAACAGCCCTATGTGAGGAGCAGTGGAGTTCGTGTGGGTGAGAGCACGCTGTTCAGTACGAAGAATGTCAgGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCATAATGCGCAAA
>XM_034300835.1
taaaaaacatggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCATAATGCGCAAA

Function

symbol description
blcap Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in myotome. Orthologous to human BLCAP (BLCAP apoptosis inducing factor).
bc10 Orthologous to human BLCAP (BLCAP apoptosis inducing factor).

NR:

description
bladder cancer-associated protein

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26606 False 1255 lncRNA 0.44 3 5957026 5965183
TU26607 True 1642 lncRNA 0.42 3 5956639 5965183
TU26608 False 1175 lncRNA 0.44 3 5957026 5965183
XM_026920539.2 False 1218 mRNA 0.44 3 5957016 5965136
XM_034300835.1 False 1034 mRNA 0.42 2 5957016 5965143

Neighbor

gene id symbol gene type direction distance location
chd6 chd6,LOC107666014 coding downstream 93206 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 276680 5659803 ~ 5679959 (-)
osgn1 LOC108272601 coding downstream 305354 5638596 ~ 5651285 (-)
mtss1 mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179 coding downstream 325382 5594109 ~ 5631257 (-)
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 436286 5508012 ~ 5520353 (-)
psmf1 psmf1,LOC107580402 coding upstream 17401 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 90639 6055822 ~ 6118568 (-)
LOC117599288 NA coding upstream 186218 6151401 ~ 6160674 (-)
tomm34 tomm34,LOC100305086 coding upstream 215845 6181028 ~ 6195188 (-)
eif6 eif6,LOC107723919 coding upstream 339989 6305172 ~ 6313411 (-)
LOC117595835 NA non-coding downstream 65807 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 85938 5870500 ~ 5870701 (-)
G22231 NA non-coding downstream 92538 5863865 ~ 5864101 (-)
G22229 NA non-coding downstream 161492 5794942 ~ 5795147 (-)
G22199 NA non-coding downstream 220943 5730446 ~ 5735696 (-)
G22345 NA non-coding upstream 24787 5989970 ~ 5990195 (-)
G22367 NA non-coding upstream 77933 6043116 ~ 6043752 (-)
G22470 NA non-coding upstream 183763 6148946 ~ 6149167 (-)
G22478 NA non-coding upstream 264577 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 317932 6283115 ~ 6283948 (-)
romo1 romo1,LOC102788570 other downstream 420579 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 542553 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 755427 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 1054628 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1624468 4332099 ~ 4332171 (-)
LOC117596222 NA other upstream 108852 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 240101 6205284 ~ 6208666 (-)
G22591 NA other upstream 514219 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2295302 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2378441 8343624 ~ 8351694 (-)

Expression


Co-expression Network