RNA id: XM_026920539.2


Basic Information

Item Value
RNA id XM_026920539.2
length 1218
RNA type mRNA
GC content 0.44
exon number 3
gene id blcap
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5956639 ~ 5965183 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

catggcagaaGCCTGTAAGCTCCCAGTGCAGCCAAATAAATATTGTcaataaaatcagaataaatacTGCCAGGGCTTTCCCAAGATTGATTAATTTATAACGGGAGAAGGGGATGAAGCTAAACAAGGAATTAGCAATGTTGCTCCTAGACAGctGCGCAGAGCCGATCACTTCAGCATGAACCGCAGCGATTACGTGTATGATGGAGAGAATTATAATCAGGCATTTTGTAGGGCACGCGGCTGTTGGGGTCCTTGACTGCTCGCTAAAACTAAACAGCCCTATGTGAGGAGCAGTGGAGTTCGTGTGGGTGAGAGCACGCTGTTCAGTACGAAGAATGTCAgGCCTGACGTAATATCTGGACTACAAAGCTGAGCTCCACCAGCAGTTGGTGGTTGTACAACACAACCACCCATCACTCTGGATATCTGTTTTGAAACTTGACCACTTCCAGCAACTACAAAGAGACAATGTACTGCCTCCAGTGGTTACTTCCGGTCCTGCTGATCCCAAAGCCGCTGAACCCAGCTCTGTGGTTCAACCATTCTATGTTCATGGGCTTCTACTTGCTTAGCTTCCTGTTGGAAAGGAAGCCATGCACCATTTGTGCCTTAGTGTTCCTCGCAGCATTGTTCCTCATTTGCTACAGCTGCTGGGGGAATTGCTTCCTTTACCACTGCCATGACTCTCCACTGCCAGACTCCGCACATGATCCCAACATTGTGGGCACCTAGACTCCAGATCCTCAAGAAATCCTCCGTAATGCTTCTTGGACAAAcgaacaaatgaacaaatatctAATGAGAAATGCTGAGAAATTTGCAGAAGATGAGAGCCTCACTGAAGTCATACTTTAATTAATCACAAACTAACCTCTTGCTGTTACTTTATTTTCCATTCTGCAAAGAGGGCACAAATTTTGGTCCATGGCTTATAGGGTTCTTCTCTTTTAATCTTTCAGTCCAACTTTCCTTTAATTCATTAGTTGCTGAAAGATTCTGATGTGTGAGCATGTACGAGTTTTATCATATAAATTTCTGTTCTTGTGTCAATCAGTTTAAATCCCAGGGTCTGAGGTGACTTCAGTGGTGGTGAATGTCCAAACTGAGCTTACTGGAGCTCAGGAGTATTGAAAGTAATGAGTTGTACTTGTGTGCAGCTCAGTTTGTTCAAATGCTGTTGCAGCTTTTAATTCAATAAAGTTCATAATGCGCAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577038.1 lncRNA downstream 66184 5889282 ~ 5890832 (-) True LOC117595835
TU26515 lncRNA downstream 86315 5870500 ~ 5870701 (-) True G22237
TU26509 lncRNA downstream 92915 5863865 ~ 5864101 (-) True G22231
TU26507 lncRNA downstream 161869 5794942 ~ 5795147 (-) True G22229
TU26474 lncRNA downstream 221320 5730446 ~ 5735696 (-) True G22199
TU26629 lncRNA upstream 24834 5989970 ~ 5990195 (-) True G22345
TU26653 lncRNA upstream 77980 6043116 ~ 6043752 (-) True G22367
TU26760 lncRNA upstream 183810 6148946 ~ 6149167 (-) True G22470
TU26749 lncRNA upstream 240148 6205284 ~ 6208654 (-) True LOC113546630
TU26768 lncRNA upstream 264624 6229760 ~ 6229969 (-) True G22478
XM_026919444.2 mRNA downstream 93583 5761737 ~ 5863433 (-) False chd6
XM_026919428.2 mRNA downstream 93583 5761737 ~ 5863433 (-) True chd6
XM_026919418.2 mRNA downstream 93583 5761737 ~ 5863433 (-) False chd6
XM_034298801.1 mRNA downstream 93583 5761737 ~ 5863433 (-) False chd6
XM_026919453.2 mRNA downstream 93982 5761737 ~ 5863034 (-) False chd6
XM_026937756.2 mRNA upstream 17448 5982584 ~ 5989372 (-) True psmf1
XM_026927486.2 mRNA upstream 90686 6055822 ~ 6118568 (-) True rims4
XM_034300540.1 mRNA upstream 108899 6074035 ~ 6076877 (-) True LOC117596222
XM_034312125.1 mRNA upstream 186265 6151401 ~ 6160674 (-) True LOC117599288
XM_026921377.2 mRNA upstream 215892 6181028 ~ 6195188 (-) True tomm34
TU26421 other downstream 420956 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 421009 5534124 ~ 5536007 (-) False romo1
XR_003403149.2 other downstream 755804 5111462 ~ 5201212 (-) False LOC113530384
XR_004577391.1 other upstream 108899 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 514266 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2297483 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2515915 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2515915 8481051 ~ 8484181 (-) False tcta

Expression Profile