G34253


Basic Information

Item Value
gene id G34253
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 27582541 ~ 27582825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU40380
AGCAAAATAGGCATACCAAAATCATCTCCTGTAGTAgaccaaaaaaaaggaaaatgaaacgTTTGAAAATAGATTAATATTCTTGTTATTGAAAGCAGTTATGGTCAAAATGAGGAGAGTGCACACAGACAAGAAAAAAGATGGGAGAGCTTGATGTGGCATTTAACAATACAGAATTGTGAATCTCTAACACAACGATAGTTAAAGCAGGATGCATCCTACTTATATTAAGACAGGCAGTCTAAGAGTCGCTCAGAGCAGGAGATTGGATATTACAATTTGAGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40380 True 285 lncRNA 0.36 1 27582541 27582825

Neighbor

gene id symbol gene type direction distance location
asic4b asic4,LOC107660096,LOC107555455,LOC107748548,LOC107705515,LOC107688893 coding downstream 39055 27505512 ~ 27543486 (-)
wnt6a LOC108273177 coding downstream 106450 27469025 ~ 27476091 (-)
cdk5r2a cdk5r2a,LOC108272557,LOC107660098,LOC107566326,LOC107705611,LOC107748545,LOC107688846,LOC107566799 coding downstream 116425 27464103 ~ 27466116 (-)
tmem198b tmem198,tmem198b,LOC107566785,LOC107705614,LOC107566325,LOC107660101 coding downstream 150538 27403295 ~ 27432003 (-)
dnpep dnpep,LOC107566786,LOC107596305,LOC107688842 coding downstream 193274 27380591 ~ 27389267 (-)
gmppab gmppa,gmppab,LOC105907596,LOC107660139,LOC107555420,LOC107566312 coding upstream 1897 27584722 ~ 27594557 (-)
rprmb LOC108273280 coding upstream 98590 27681415 ~ 27683078 (-)
ino80db LOC108272719,LOC108266575,LOC108424342 coding upstream 152488 27735313 ~ 27745996 (-)
dytn dytn coding upstream 205032 27787857 ~ 27797478 (-)
casp8 NA coding upstream 222536 27805361 ~ 27813221 (-)
G34159 des,desmb,LOC108437828,LOC107566324,LOC107705613,LOC107660100 non-coding downstream 186081 27319771 ~ 27396460 (-)
G34154 NA non-coding downstream 275361 27304820 ~ 27307180 (-)
G34132 NA non-coding downstream 313421 27268299 ~ 27269120 (-)
LOC113538529 NA non-coding downstream 416196 27166242 ~ 27166345 (-)
G33939 NA non-coding downstream 762372 26776023 ~ 26820169 (-)
G34309 NA non-coding upstream 143482 27726307 ~ 27726506 (-)
G34514 NA non-coding upstream 220318 27803143 ~ 27804389 (-)
LOC113538491 NA non-coding upstream 260840 27843665 ~ 27846043 (-)
LOC113538492 NA non-coding upstream 265898 27848723 ~ 27852405 (-)
G34543 NA non-coding upstream 273519 27856344 ~ 27857191 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other downstream 933162 26639833 ~ 26649379 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other downstream 944003 26630829 ~ 26638538 (-)
slc19a1 slc19a1 other downstream 1476866 26081149 ~ 26105675 (-)
LOC113538393 NA other downstream 1674547 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 1843724 25680090 ~ 25738817 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 163299 27746124 ~ 27757546 (-)
LOC113538277 NA other upstream 251988 27834813 ~ 27841597 (-)
G34533 NA other upstream 259734 27842559 ~ 27852397 (-)
ube2o ube2o,LOC101886876,LOC104959255 other upstream 274733 27857558 ~ 27895548 (-)
LOC113538331 pitpnc1,LOC108424775,LOC102779150 other upstream 693388 28276213 ~ 28366271 (-)

Expression


Co-expression Network