G34309


Basic Information

Item Value
gene id G34309
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 27726307 ~ 27726506 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU40450
GTGACATTTGGCTTTGTCATCAatgcttgtttttcattttattctcttttttaaagagaaattgcagcctttattttaagaaatgtggtttgtgtacgagtgtgtgtgtgtgtgtgtgcgactgtgtgtgagagagagagaaagagagagcgagagagagagagatactgagaGAATCAGagactgtgtgtatttttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40450 True 200 lncRNA 0.39 1 27726307 27726506

Neighbor

gene id symbol gene type direction distance location
rprmb LOC108273280 coding downstream 43229 27681415 ~ 27683078 (-)
gmppab gmppa,gmppab,LOC105907596,LOC107660139,LOC107555420,LOC107566312 coding downstream 131750 27584722 ~ 27594557 (-)
asic4b asic4,LOC107660096,LOC107555455,LOC107748548,LOC107705515,LOC107688893 coding downstream 182821 27505512 ~ 27543486 (-)
wnt6a LOC108273177 coding downstream 250216 27469025 ~ 27476091 (-)
cdk5r2a cdk5r2a,LOC108272557,LOC107660098,LOC107566326,LOC107705611,LOC107748545,LOC107688846,LOC107566799 coding downstream 260191 27464103 ~ 27466116 (-)
ino80db LOC108272719,LOC108266575,LOC108424342 coding upstream 8807 27735313 ~ 27745996 (-)
dytn dytn coding upstream 61351 27787857 ~ 27797478 (-)
casp8 NA coding upstream 78855 27805361 ~ 27813221 (-)
catip catip coding upstream 90401 27816907 ~ 27823206 (-)
pnkd pnkd,LOC107705600,LOC107660081,LOC107584757,LOC107555416 coding upstream 96808 27823314 ~ 27831878 (-)
G34253 NA non-coding downstream 143482 27582541 ~ 27582825 (-)
G34159 des,desmb,LOC108437828,LOC107566324,LOC107705613,LOC107660100 non-coding downstream 329847 27319771 ~ 27396460 (-)
G34154 NA non-coding downstream 419127 27304820 ~ 27307180 (-)
G34132 NA non-coding downstream 457187 27268299 ~ 27269120 (-)
LOC113538529 NA non-coding downstream 559962 27166242 ~ 27166345 (-)
G34514 NA non-coding upstream 76637 27803143 ~ 27804389 (-)
LOC113538491 NA non-coding upstream 117159 27843665 ~ 27846043 (-)
LOC113538492 NA non-coding upstream 122217 27848723 ~ 27852405 (-)
G34543 NA non-coding upstream 129838 27856344 ~ 27857191 (-)
G34564 NA non-coding upstream 190849 27917355 ~ 27920037 (-)
si:ch73-23l24.1 LOC108437696,LOC108272416,LOC107559918,LOC107748583,LOC103032506,LOC107688887 other downstream 1076928 26639833 ~ 26649379 (-)
ecrg4b c6h2orf40,LOC108273346,LOC108437667,LOC105893352 other downstream 1087769 26630829 ~ 26638538 (-)
slc19a1 slc19a1 other downstream 1620632 26081149 ~ 26105675 (-)
LOC113538393 NA other downstream 1818313 25900730 ~ 25907994 (-)
nbeal1 nbeal1 other downstream 1987490 25680090 ~ 25738817 (-)
ndufs1 ndufs1,LOC103033212,LOC107555450,LOC107748553,LOC107705604,LOC107660088,LOC107566318 other upstream 19618 27746124 ~ 27757546 (-)
LOC113538277 NA other upstream 108307 27834813 ~ 27841597 (-)
G34533 NA other upstream 116053 27842559 ~ 27852397 (-)
ube2o ube2o,LOC101886876,LOC104959255 other upstream 131052 27857558 ~ 27895548 (-)
LOC113538331 pitpnc1,LOC108424775,LOC102779150 other upstream 549707 28276213 ~ 28366271 (-)

Expression


Co-expression Network