txnrd3 (txnrd3,LOC105934676)


Basic Information

Item Value
gene id txnrd3
gene name txnrd3,LOC105934676
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14158384 ~ 14172056 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026918449.2
TGGCACGACTCGTGCTTTCGCGGGTTCATAAATACCGGCGAGCTCGAGGCGAGCAGAGCCAGACAGATGACCCGTGAAGAGATATGCGGGAAATAAAGCGTATACGTCTGTCGTTTGTTCGTTTTGGTTTTCCTTAGTTgtcttttgttgatttgaacTTGTTTTAGCACAGTGTCAGGACGCAGTGTTGCTCCAGTCTGAGTGGGAAGAGTTCGGTAAGAACTTCGCTATTCATCTTCCCGGCTAGTAATTTAGCTCCCTCTGATCCGCAGTAACGCGCGCGGCATTTTCCGGTCTAATCATGCCGCCGGTAGAGACCGAGAACGATCCAATTAAAGCTCGGATACAGGAGCTCATCGACACCAATCCTGTTGTGATTTTCAGCAAAAGCTACTGTCCCTACTGTAAAAAGGTGAAGGAGCTCTTTAAAGAGTTGAATGTGACATGCGAAGCCATAGAACTGGATCTGATTGAGAATGGATCCATCTACCAGGATGTGCTGATGGTGATGACTGGACAGAAAACCGTCCCCAATGTCTTTGTCAACAAGACACATATAGGAGGCTGCGACAAGACCATGCAGGCATATAAAGATGGCCACCTACAGCAGCTGCTGGGAGCGGAGAGCACGGCATACGACTATGACCTTATTGTGATAGGAGGTGGCTCTGGAGGTCTGGCCTGCTCAAAGGAAGCAGCTGCTTTAGGGAAGAGGGTCATGGTTCTAGATTATGTTGTACCCACACCTTTGGGCACATCTTGGGGTCTGGGTGGTACATGTGTGAACGTGGGATGTATTCCTAAGAAGCTGATGCATCAGACCGCCCTGCTGCGCACTGCTTTGGAGGATGCCCGCAAATTTGGCTGGGAGTTCAGTGAGGCAGTAAGTCATAACTGGGAAACGATGAAGACTGCCGTGAATAACTACATCGGCTCTTTGAACTGGGGCTACAGAGTGTCTTTACGTGACAAGAATGTCGAATATATGAATGCGTATGCAGAGTTTGTGGAGCCACACAAAATCAAGGCCACAAACAAGCGAGGCAAAGAGACATTCTACACTGCAGCTAAGTTTGTGCTGGCAACGGGAGAGCGGCCACGCTACCTGGGCATCCCTGGAGACAAAGAATACTGCATCACCAGTGATGATCTGTTCTACTTGTCCTACTGTCCTGGTAAGACACTAGTGATCGGAGCATCGTACGTGGCTCTGGAGTGCGGAGGGTTCCTGGCAGGGCTGGGGCTTGATGTCACCATAATGGTACGCTCCATTCTGCTGAGAGGCTTTGACCAGGACATGGCCAACCGTGCAGGGGAACACATGGAGACACATGGGGTCAAATTCCTCAGGAAGTTTGTCCCTGTTAaggtggagcAGCTTGAGGCTGGCTCTCCAGGCAGATTGAAAGTGACTGCTAAGTCTACAGAGACTGATGAGATCATCGAAGGAGAGTACAACACTGTACTGATAGCTGTGGGTCGTGATGCTTGTACAGGAGCTATAGGTCTAGACAAGGTTGGGGTGAAGGTCAACCCAAAGAATGGGAAGATCCCAGTAAATGATGGAGAGCAGACCAACATTCCACACATCTACGCTATCGGGGACATCCTGGAGGGCAAGTGGGAGCTGACTCCTGTGGCCATTCAGGCTGGAAAACTCCTGGCTCGCAGGCTATTTGCAGGTTCCACTGTGAAGTGTGACTATGTGAATGTTCCTACCACGGTGTTCACACCTCTGGAGTATGGCAGTTGTGGTCTTTCTGAGGAAAAGGCTATAGAGCTTCATGAAGAGGAAAACCTGGAGATTTTTCATAGTCTGTTTTGGCCTCTGGAGTACACCATACCCAGCAGGGACAACAACAGGTGCTATGCCAAGATCATCTGCAACAAGTTGGACAATGATCGTGTTATTGGTTTTCACTACCTGGGCCCTAATGCTGGAGAGGTGACTCAGGGCTTTGGTGCTGCCATGAAGTGTGGAGTTACAAAGGAGCAGTTAGACAGCACCATTGGGATACACCCTACCTGTGCTGAGATCTTCACCACAATGGAAGTGACCAAGAGGTCAGGTGGTGACATCAAACAGGCTGGTTGCTGAGGTTAAACCCTGCTCGTTTAATAGGCTGTCCTAAAACCGTATGAACTGGTTCACACTAGTTTATACTGGCCTCATCCATCCTTTAAGCAATTTCTTGGCTTTTCTTCTCTGCATTCAAAATAAGCTTTTCCACTAGATTCCTAGCTTTTGAGCTCCACTCAAGGCTAAACCAAGTCTACCACACAGCAATAAAAGATGGAATTGGATGAAAGCGCAAGCTAGCTTAGAGTGCGCTCAAGAGTTTAATTGTAGTGAAGACACATTGGTTAGCTGTGGCCTTGGAGGATCTAGGATAGATGTTCTTTAAATTTAACTGCTGGATACCACTTGAAGCTTCTACGGTTCCTCCATAGGAGTGAGTGTTTTTAGTGGTTGCATTTAAGGAAGTCCTCAGACCGTGGTCCTCCAGGACTGAGCTTAACCTGCTGCAGAGGAGAGAAGCTGGAGAAGTTAAAATCCTGTAGGACAGCCTGTTAAACAGCGGGGTTACTCTGCTGCTCCAAATCCTCCAAGCCTAAGACAGAATTGCACTGGGGGAGGACACATGCCTTTGTGATCACTTTCCCAAGTGCTTTGTGACGTTTTAGCCCTTAACCTGAATTCTGAGGTGGGCTAAGACTGATAATGGTCTGTGCTTAGACGTAAGAGGTAAACACACTTTCCtgtacaaacatacacaaaaattCTAGTCCAGTAACCTCAGCTCCAGGCTCACAAGTAGGACTTGGGGCTATCAGTTGCCCAGAAATACTGCAGTGCTGCACAATCATGACTGTTAGAACTGGGTCTTTGAGCACATGTGATGAATACATGTAAAAGCCAGATAGAGTTACTAATGATTTAATCCACCGTAGCCTAGGACATTAATACCCATTAATGCTAAACATGTTTGTTAAACATGTCAACATTTTTGGGAACTCAGGCCagataattattttgtttacttttaaagTTAGTGGTATGTGTGCTCTACAttgtttctcttgtttttttgtttgtttgtttgttttttggtcatTATTTGATCCCTTATCCTTACCAACATTCCATCCATGGATCATTTAACAATTAGTTGGTTTGTTCTTTTCCATTTGTGTCAGTCCATTGTCTAGTTGGAAGCTTTTTACTAAACAGCCAGTCATGAGAGAATAAATTGTGGTCTTACTAAATCTCAAAACAAAACTGGCATATAGTTTGGCAAAATATCAGATGTccattaaacataattaaatggAAAGATTTGTGAACATTAAATTGGTTTTGAACGAAATGCACTTAAATTActgaatttaataaattttactatttaaaagtTGTTCAGATCATAatcaaatgccttttttttatcagtttgaaCTCACTGTTCTTGAAATATATATAGACCCCCTGGTTGGTGTGgactttattaaatataaaaccctGCTGATGTGTTGTTACTTAGCAACAGTGCCTGGTAAATGTACAAACCAGTGTTTCCATGGTATCACTGTTTTCAGTGTAATTGAAAGAACTTTAATAAAGCTATGTACACTGAA

Function

symbol description
txnrd3 Predicted to enable thioredoxin-disulfide reductase activity. Predicted to be involved in cell redox homeostasis. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; hematopoietic system; nervous system; pectoral fin musculature; and ventral mesoderm. Orthologous to human TXNRD3 (thioredoxin reductase 3).

NR:

description
PREDICTED: thioredoxin reductase 1, cytoplasmic-like

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004791 thioredoxin-disulfide reductase activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0050661 NADP binding molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG:

id description
K22182 TXNRD; thioredoxin reductase (NADPH)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026918449.2 True 3633 mRNA 0.45 16 14158384 14172056

Neighbor

gene id symbol gene type direction distance location
LOC113531636 chst13,LOC106565240,LOC104944027 coding downstream 10535 14129841 ~ 14147849 (-)
cfap100 cfap100 coding downstream 114059 14030764 ~ 14044325 (-)
LOC113533843 NA coding downstream 415824 13738543 ~ 13742560 (-)
acvr1bb acvr1bb,LOC108271957,LOC108427611,LOC107690814,LOC105017213,LOC107686786,LOC106583225 coding downstream 431310 13707454 ~ 13727074 (-)
rplp2 NA coding downstream 528838 13626968 ~ 13629546 (-)
plxna1b plxna1 coding upstream 105993 14278049 ~ 14457232 (-)
trnae-cuc_5 NA coding upstream 220224 14392280 ~ 14392351 (-)
chchd6b chchd6 coding upstream 324164 14496220 ~ 14541322 (-)
tpra1 tpra1,LOC107666698 coding upstream 373133 14545189 ~ 14554473 (-)
trim107 LOC108271930 coding upstream 385506 14557562 ~ 14560676 (-)
G27168 NA non-coding downstream 285 14156938 ~ 14158099 (-)
LOC117599875 NA non-coding downstream 58695 14063956 ~ 14099689 (-)
G27105 zxdc non-coding downstream 129500 14027302 ~ 14028884 (-)
G27043 NA non-coding downstream 321902 13835830 ~ 13836482 (-)
G27016 NA non-coding downstream 367018 13788793 ~ 13791366 (-)
G27169 NA non-coding upstream 616 14172672 ~ 14172921 (-)
LOC117596067 NA non-coding upstream 66739 14238795 ~ 14251264 (-)
G27254 NA non-coding upstream 182785 14354841 ~ 14401429 (-)
G27259 NA non-coding upstream 272570 14444626 ~ 14454291 (-)
G27303 NA non-coding upstream 320581 14492637 ~ 14492839 (-)
G27107 LOC108272123 other downstream 99939 14050401 ~ 14058445 (-)
lhfpl4a lhfpl4,lhfpl4a,LOC107656118,LOC107586345,LOC107710167 other downstream 251195 13864944 ~ 13907189 (-)
fkbp11 fkbp11,LOC108271940,LOC108271564 other downstream 511207 13640381 ~ 13647177 (-)
rps26l rps26,RPS26,rps26l,LOC107708153,LOC107554198 other downstream 523640 13632262 ~ 13634744 (-)
slc5a8l slc5a8l,LOC108272176,LOC108427595,LOC107708058,LOC107685825,LOC107554166,LOC107666019,LOC107596840,LOC105007571,LOC107729725 other downstream 656214 13493512 ~ 13502170 (-)
pxmp4 pxmp4,LOC103464829 other upstream 700892 14872948 ~ 14875990 (-)
G27843 NA other upstream 1125253 15297309 ~ 15299019 (-)
G27925 cav3,LOC107749619,LOC107584510,LOC107577493 other upstream 1284579 15456635 ~ 15461001 (-)
oxtr oxtr,LOC107584509,LOC107673460,LOC107658098 other upstream 1289894 15461950 ~ 15495209 (-)
eif4enif1 eif4enif1,LOC107568191,LOC107584417 other upstream 1953774 16125830 ~ 16135715 (-)

Expression


Co-expression Network