sdc4


Basic Information

Item Value
gene id sdc4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6527609 ~ 6537373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920606.2
GGCTATAGAACCTGAGCTCGTGCGGCGGCGGGGCATCAAAAGAAAGCGACGCTGCTGCGACTTGGTGCTTTTGTGTGTAactctaaatctaaagctacgTTTAAAGAGCTTCAGCCTGTCCTCTAAAGGAATACGTTTCACTTCTCTTGGATTCCAAGATGCTGAAAGTGACCCTCGTGTTGGTTTTACTGGCTGCTGCTGCCTTGGCCGAGTCGGTACGAGAGACagaaacatggatgcctccaaaGCCTGGGACATCACACGAAGACTTCGACTCATCTGGTGATTTCATTTTTCCCAGTGAGGACAGCACAAGATATGATGATGAGGACAATGATGGGGACGATGATGAAATATCAGGCTCTGGTGATGACAAGCCATTAGTGAAGAACAATGAAGAAGTTGCAAAATCTGAGCCTAAAGACTTTGATAACCGCATCCCAGAGATAGATGTTCAGCCTCGGCCAACAGATAATGAGATGCAGCTGGTGAGAGAGAACGAAGTTGCTCATCCTCCCAGTGTCCAGCTGTCTCACGCAGGAGAACAGAACATTTTTAACAAGACAGAAGTGCTGGCCGctgttatTGCTGGTGGTGCAGTTGGGCTGCTTTTTGCTGTGcttctcatcctcctcctcgtcTACCGCATGAAGAAAAAGGACGAAGGCAGCTACGATTTGGGCAAGAAGCCCATTTACAAGAAAGCTCCCACCACCGAGATCTACGcatgaacacaaacattctTGAGCTAACTCAAATATGAACTCTGAACTCTCAAATCACACAGTGCCTCTGACGCACAGCTAggctccatctctctgtctagCTTGAGAAACCGCAAACCAGCATCTCAGATGAAACCGTGATTACTCTGACTGCATATTTGAATTTAACTTTATCAGGAGATAAGGTGCTCTGTTGCAGCCTGAACTGTATAAGTcctgacattttcctttttgtGTCTGGTTTCCCATTGTTTTGCTCAAAGTAAATAGCCATTGTTATCCTTTTCTTTACTTCCCTGTTTTGTAACACTAAAAGGTGCAAATGGGGCCCTTTTGCGGCTGAAAAATATGGATTCAAAGTCTGTACAAAACTTTGAAACCGTCAAAACTGACTCTATCTGCACACGCCTGTGTCATTTAGCAGAAGTATGTGCTGTAGGTGCTGGGGAACGTTACTGTAGCCTTTTGCTTTTAAAGAAACTGtactgattaattttttttccattcttagGGCAAAGCGGTAAAAATTGATACTCGAGAATTGAGAACATTCTGTTCATCTTCTGAAAGCGACCTTGGGGCATTAACGTTAATGTAGGttatttttaacacagcaaATAAGGTATTCTTACATTCCACATGTCTATATTGTCTATGTTAATTATGAATGATCAAGTTTCAGACTAAAATAATTAAGTATCCCGGTCACTGAGCTTAGCTGCGCCTCTTACTTTGAGTTGacaattacacatattttttgcAGAAGACCTCAAGAAAGATCTCTGCAAACAGTTTTCTCATTTCCAGGGGTCTGTAAATAGCCGTTAGAATATGTTGAAAGTGTACACCTTGGTACGTGGCCATTTTTGGCGAACTTCTATTTACCAAATATTTAAATGCCAAAATAATTCTCTTCTTGTTTTGTCCCGGTATTGAGTATGCAAATTAAACATAGAGTGAGTGactctttattgtttttatattgctTCTTTACCAGTGCAAAATGGGTGTCTCAAATTGATGACCAATGCTTATACTAACTTTTGTTctgtttctcagtgtttttatagttaacgttttctgtctcttttcagtgtttcatagaatacttcttttttattattatattgtgttaATTTAACTTTTGAATAGACTATTTTATTGCCTTCCTTCAGGTCGGGGGTTTCTTCCCCATCTAAGCTGTACATGTGATTTTAGAAAAGAGAAATCTATACACTagtggaagattttttttcgaagagttttgatgcattttttatattgtaagagtttttatttcttttagtcCTTTTTAAGTGATgtctatttatattttgtagaaGGATACTCGTACTAGTTACAAGGTGAATGAATGAGCCATGTTATTTGCATGGGGTGAAAGTATGAAAATTTGCTGCTTTTTTCCTTCAACACATGATGTGAAATCACCGATGTAGTGAAGAAATCAGTGGATCGTTGGTTTCTGCATGCAGGTTCTAATCTGATcagaaataaagttatttttgtGCACATTA

Function

NR:

description
syndecan-4-like

GO: NA

KEGG:

id description
K16338 SDC4; syndecan 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920606.2 True 2260 mRNA 0.40 4 6527609 6537373

Neighbor

gene id symbol gene type direction distance location
gdf5 gdf5 coding downstream 11186 6503521 ~ 6516423 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding downstream 65319 6433919 ~ 6462290 (-)
fam83c fam83c coding downstream 113999 6400416 ~ 6413610 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding downstream 164774 6324114 ~ 6362835 (-)
eif6 eif6,LOC107723919 coding downstream 214198 6305172 ~ 6313411 (-)
oser1 oser1 coding upstream 11982 6549355 ~ 6555184 (-)
rbpjl rbpjl,LOC108271532 coding upstream 41239 6578612 ~ 6602109 (-)
LOC113531909 stk4,LOC108435692,LOC105901859,LOC103371188 coding upstream 207010 6744383 ~ 6770848 (-)
rhebl1 rhebl1,rheb,LOC103035598,LOC108435697,LOC105901881,LOC107710165 coding upstream 244900 6782273 ~ 6787592 (-)
cntn4 cntn4,LOC108272185,LOC108435696,LOC107713523,LOC107667016,LOC106582845 coding upstream 263552 6800925 ~ 6959160 (-)
G22538 NA non-coding downstream 226562 6298122 ~ 6301047 (-)
G22539 NA non-coding downstream 243661 6283115 ~ 6283948 (-)
G22478 NA non-coding downstream 297640 6229760 ~ 6229969 (-)
G22470 NA non-coding downstream 378442 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 483857 6043116 ~ 6043752 (-)
G22650 NA non-coding upstream 84562 6621935 ~ 6622442 (-)
G22695 NA non-coding upstream 138107 6675480 ~ 6675687 (-)
G22699 NA non-coding upstream 146081 6683454 ~ 6683730 (-)
G22743 NA non-coding upstream 180902 6718275 ~ 6765692 (-)
G22896 NA non-coding upstream 262145 6799518 ~ 6800819 (-)
G22591 NA other downstream 47598 6479402 ~ 6480011 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other downstream 318943 6205284 ~ 6208666 (-)
LOC117596222 NA other downstream 450732 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 562426 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 991549 5532037 ~ 5536060 (-)
mitfa mitf,LOC108424034 other upstream 1723112 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 1806251 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 1942001 8479374 ~ 8484181 (-)
tusc2a LOC108271982,LOC108433681,LOC104930950,LOC107595412,LOC107724521 other upstream 2898133 9435506 ~ 9441845 (-)
tnnt2b tnnt2,LOC108441587,LOC107696448,LOC107595452 other upstream 3178143 9715516 ~ 9726051 (-)

Expression


Co-expression Network