RNA id: XM_026920606.2


Basic Information

Item Value
RNA id XM_026920606.2
length 2260
RNA type mRNA
GC content 0.40
exon number 4
gene id sdc4
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6527609 ~ 6537373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGCTATAGAACCTGAGCTCGTGCGGCGGCGGGGCATCAAAAGAAAGCGACGCTGCTGCGACTTGGTGCTTTTGTGTGTAactctaaatctaaagctacgTTTAAAGAGCTTCAGCCTGTCCTCTAAAGGAATACGTTTCACTTCTCTTGGATTCCAAGATGCTGAAAGTGACCCTCGTGTTGGTTTTACTGGCTGCTGCTGCCTTGGCCGAGTCGGTACGAGAGACagaaacatggatgcctccaaaGCCTGGGACATCACACGAAGACTTCGACTCATCTGGTGATTTCATTTTTCCCAGTGAGGACAGCACAAGATATGATGATGAGGACAATGATGGGGACGATGATGAAATATCAGGCTCTGGTGATGACAAGCCATTAGTGAAGAACAATGAAGAAGTTGCAAAATCTGAGCCTAAAGACTTTGATAACCGCATCCCAGAGATAGATGTTCAGCCTCGGCCAACAGATAATGAGATGCAGCTGGTGAGAGAGAACGAAGTTGCTCATCCTCCCAGTGTCCAGCTGTCTCACGCAGGAGAACAGAACATTTTTAACAAGACAGAAGTGCTGGCCGctgttatTGCTGGTGGTGCAGTTGGGCTGCTTTTTGCTGTGcttctcatcctcctcctcgtcTACCGCATGAAGAAAAAGGACGAAGGCAGCTACGATTTGGGCAAGAAGCCCATTTACAAGAAAGCTCCCACCACCGAGATCTACGcatgaacacaaacattctTGAGCTAACTCAAATATGAACTCTGAACTCTCAAATCACACAGTGCCTCTGACGCACAGCTAggctccatctctctgtctagCTTGAGAAACCGCAAACCAGCATCTCAGATGAAACCGTGATTACTCTGACTGCATATTTGAATTTAACTTTATCAGGAGATAAGGTGCTCTGTTGCAGCCTGAACTGTATAAGTcctgacattttcctttttgtGTCTGGTTTCCCATTGTTTTGCTCAAAGTAAATAGCCATTGTTATCCTTTTCTTTACTTCCCTGTTTTGTAACACTAAAAGGTGCAAATGGGGCCCTTTTGCGGCTGAAAAATATGGATTCAAAGTCTGTACAAAACTTTGAAACCGTCAAAACTGACTCTATCTGCACACGCCTGTGTCATTTAGCAGAAGTATGTGCTGTAGGTGCTGGGGAACGTTACTGTAGCCTTTTGCTTTTAAAGAAACTGtactgattaattttttttccattcttagGGCAAAGCGGTAAAAATTGATACTCGAGAATTGAGAACATTCTGTTCATCTTCTGAAAGCGACCTTGGGGCATTAACGTTAATGTAGGttatttttaacacagcaaATAAGGTATTCTTACATTCCACATGTCTATATTGTCTATGTTAATTATGAATGATCAAGTTTCAGACTAAAATAATTAAGTATCCCGGTCACTGAGCTTAGCTGCGCCTCTTACTTTGAGTTGacaattacacatattttttgcAGAAGACCTCAAGAAAGATCTCTGCAAACAGTTTTCTCATTTCCAGGGGTCTGTAAATAGCCGTTAGAATATGTTGAAAGTGTACACCTTGGTACGTGGCCATTTTTGGCGAACTTCTATTTACCAAATATTTAAATGCCAAAATAATTCTCTTCTTGTTTTGTCCCGGTATTGAGTATGCAAATTAAACATAGAGTGAGTGactctttattgtttttatattgctTCTTTACCAGTGCAAAATGGGTGTCTCAAATTGATGACCAATGCTTATACTAACTTTTGTTctgtttctcagtgtttttatagttaacgttttctgtctcttttcagtgtttcatagaatacttcttttttattattatattgtgttaATTTAACTTTTGAATAGACTATTTTATTGCCTTCCTTCAGGTCGGGGGTTTCTTCCCCATCTAAGCTGTACATGTGATTTTAGAAAAGAGAAATCTATACACTagtggaagattttttttcgaagagttttgatgcattttttatattgtaagagtttttatttcttttagtcCTTTTTAAGTGATgtctatttatattttgtagaaGGATACTCGTACTAGTTACAAGGTGAATGAATGAGCCATGTTATTTGCATGGGGTGAAAGTATGAAAATTTGCTGCTTTTTTCCTTCAACACATGATGTGAAATCACCGATGTAGTGAAGAAATCAGTGGATCGTTGGTTTCTGCATGCAGGTTCTAATCTGATcagaaataaagttatttttgtGCACATTA

Function

GO: NA

KEGG:

id description
K16338 SDC4; syndecan 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26832 lncRNA downstream 226562 6298122 ~ 6301047 (-) True G22538
TU26833 lncRNA downstream 243661 6283115 ~ 6283948 (-) True G22539
TU26768 lncRNA downstream 297640 6229760 ~ 6229969 (-) True G22478
TU26749 lncRNA downstream 318955 6205284 ~ 6208654 (-) True LOC113546630
TU26760 lncRNA downstream 378442 6148946 ~ 6149167 (-) True G22470
TU26972 lncRNA upstream 84562 6621935 ~ 6622442 (-) True G22650
TU27022 lncRNA upstream 138107 6675480 ~ 6675687 (-) True G22695
TU27026 lncRNA upstream 146081 6683454 ~ 6683730 (-) True G22699
TU27070 lncRNA upstream 180902 6718275 ~ 6765692 (-) True G22743
TU27226 lncRNA upstream 262145 6799518 ~ 6800819 (-) True G22896
XM_034311409.1 mRNA downstream 11186 6503521 ~ 6516423 (-) True gdf5
XM_026923858.2 mRNA downstream 65319 6433919 ~ 6462290 (-) True LOC113532448
XM_026926155.2 mRNA downstream 113999 6400416 ~ 6413610 (-) True fam83c
XM_026935885.2 mRNA downstream 164774 6324114 ~ 6362835 (-) True mmp24
XM_026915885.2 mRNA downstream 214198 6305172 ~ 6313411 (-) True eif6
XM_026928164.2 mRNA upstream 11982 6549355 ~ 6555184 (-) False oser1
XM_026928077.2 mRNA upstream 11982 6549355 ~ 6555170 (-) True oser1
XM_034310019.1 mRNA upstream 11982 6549355 ~ 6555102 (-) False oser1
XM_026921138.2 mRNA upstream 41239 6578612 ~ 6602109 (-) False rbpjl
XM_026921156.2 mRNA upstream 41239 6578612 ~ 6602109 (-) False rbpjl
TU26888 other downstream 47598 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 450732 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 991549 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 991602 5534124 ~ 5536007 (-) False romo1
XR_003403148.2 other downstream 1326397 5111463 ~ 5201212 (-) False LOC113530384
XR_004580309.1 other upstream 1725246 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1943678 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1943678 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1943678 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2898190 9435563 ~ 9441810 (-) False tusc2a

Expression Profile