RNA id: XM_034311409.1


Basic Information

Item Value
RNA id XM_034311409.1
length 2947
RNA type mRNA
GC content 0.45
exon number 3
gene id gdf5
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6503521 ~ 6516423 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gacagagagggaggaggagagagagtggaAGAGAGGGAGATGGCGAGCGAGAAGAGAGACGGAGAaagagactgagaaaaagagagctaATTACAACATTCTTCCCAGTTGAAGCAAGTTGTGTGAAGTGTTCGCTCGCAGGGTAAGTGCCCAGAACTGCGCAAGACTCCATACCGTTCACAGCGTTTTTGATATCCATCGCACTCTCGGACCTGCGTGATGGAGCGCAACTGCACGTGCAAGCAATTCGCCCGACTATGGTTCTGCAGGGCAATAATCACAACTTTGTAATTTTAACCTGCTTCAAATCCAGCCATGTGAGCATGTACCTTCACTTCCCAGGTTCCTTTCATGGTCGCGGAACGGTCATCTTCGCGCGTTTCTCCTGCGTCGGAACCCGCACGAAACTCCGAGGATGAACGCGCTCGCGCTGTTCTTCAGCTGCTGTGCGCTTTTGTGCATGCACTTGGTATCGCAAGCCCTTGGCCTCGAACCCAAACCGAGGCTAACGTCCTCGGCAGCGAACAGCGGCGCCAAGATCTCGCGCATTCGCGCTGCGGCACCTCCGATTCCGGCCGAAGCAATGCCCCCGCACCGCGCAGCGCACGCGCCCTCAGGACTCACCGCACGCACCAGCGGAGCAAAAGCCGTCCTCACGGCGCATCAAAGAGTGTCGGCAAAAAGGAGCGTGAAGGTGAAAGGCAAagcggaggagagagagacaccgaGACAACCGGTTGTCACACCGCATGATTACATGCTGTCTCTTTACTGGTCTCTGTCCACTGGGCAGATGAATGGGAGCGCAGTGCACGAGGCGGGCATGGCTAACACCATCACGAGCTTCGTGGACAAAGGACAAGATGAGCATGTGCCCCTGTTAAGGCGCCAGAGGTATTACTTTAACATCAGCTCCCTGGAGAAGGAGGGACTGCTGGGAGCTGAATTACGCATTCTCCGAAAGCCTTCATTGATCATCTTAGAATCTGCCACTGAGGGCAGAACTACTCTTCGACTTTACACATGTGCCACAAGTAAGCAGAGGGCTATGCTGCTCCAGTCGCAGCCCGTAGAGGATCGCAGCATCCCAAAATGGGAGGTGTTTGACATTTGGAAACTATTCAAGAGTTTCAGAAACACTGTTCAGCTTTGTTTTGAGTTGGAGGCAATGGATCGTGGCCGCCCACTGGACCTCAGGTCACTTGGCCTGGATCGTTCAGGCCGGCAAAACAAGGAGAAGGCCTTCTTTGTGGTGTTCAGCCGCACAAAGAAGCATGGTCTCTTTTACAACGAGATCAAGGCCCGCTCAGGCCATGACAACAAAACTGTCTACGAGTACCTGTTTACGCAGCGCAGGATGCGCCGGGCACCACTGCCACGTGTCAAGAAGCCGAGCAGAAGTCCAAAGACACGGTGCAACCGCAAGCAGCTGCATGTTAACTTTAAGGAGATGGGCTGGGATGACTGGATCATCGCACCATTAGAGTATGAGGCCTTCCACTGTGACGGAATCTGTGATTTTCCCATCCGCTCACATCTGGAGCCCACCAATCATGCCATCATCCAGACACTCATGAACTCCATGGATTCTCACTTGACGCCACCCACCTGTTGTGTACCCACCAGACTTAGTCCTATCAGTATTCTCTACATTGACTCAGCTAATAATGTTGTATACAAGCAATATGAGGACATGGTGGTAGAAAGTTGTGGCTGTAGATAGCCAAAAGTACTAGAAGAGAATGCTAAGGGGAAAAAATTCTACTATTCTAAAGCTATACATATTGATCTTGCATTCTGTGGCTTACTCTGTTGCATCAGTGTCCTCTCTCAAGATTTGATGGGCTCAAGCATATCATTTAGGTCATTGGAATAGTTTGGACTAGatgcatacacacagtacattCTCCTATTTGTTAATCTATTAAGATACACAATCCTCAGCACAACTCTGCTAAGATTGGTTCAACTCCCATGTGAAGGGTGAGTCCATACAGGtgttttcaatatttaaaaaaaatcccttaatTGATTACACAAACCtaaattaatattcacatattaATTTAGGTTACACAGCTAACCTAAACTTGTAGTTCAAAAAATATCCCAGACTCAGAATTCTGAATTCAAGATGATATATTAGATGATCTTCAGATTAAGTGGCATAAGTCTTCAACTTAAGTTCAAATGTTATGCTGGGAAGGTCTAAACTTATGCTGGGACAGttatctgtattcatatttaaGCAGGTGCTTAACTTTCGTTTCTGGGCAGTCCAGattattaaatctgttttttttttttattaagaaaacaCTATTTGTTTTTTCCATCAGTGGTATGCTGCAGTAGCCTgacctaaacactgccttactccaaaataaattcagatttctaccatatttctgtacaaacaatagaaatgtttttatttacagagcTGCTGCTCCATATAGCCCATGGAGACCATGCACTGTGCATACGGTAGCATATATTTGATGGAGTTTccaaaaaattcatttttgtacATTCATTGCATTCTTAAATAATCATTCCccatcattattaaaagaaaatcatccTGGAAAATCATGtgggcattataatgaaatgcttcTTAAAGGACCCCAGAAGAACTCTTCTGaactttctgatctttctgaaTGTAACAAACCCACTAAACTacctaaagtaaatctgataaaatattatagaTGTCAATTGTTGTCAactgtaaataacagtttcttgatttggaaAAGACATTGATGttttgtattcagatttaagcAGGTGGTAAACTTTCATTTTTGGACAgtccattcagattattaaaattatctgCATGCAGTTCACGGCTCTGAGGTTGCTAGATTTTACTTTTATAGAGCTCTCAGGACAGGAGTTTTTCAGTTGTGTCTGTATCACTGCCTTTAAAGACAAC

Function

GO:

id name namespace
GO:0040007 growth biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04664 GDF5; growth differentiation factor 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26832 lncRNA downstream 202474 6298122 ~ 6301047 (-) True G22538
TU26833 lncRNA downstream 219573 6283115 ~ 6283948 (-) True G22539
TU26768 lncRNA downstream 273552 6229760 ~ 6229969 (-) True G22478
TU26749 lncRNA downstream 294867 6205284 ~ 6208654 (-) True LOC113546630
TU26760 lncRNA downstream 354354 6148946 ~ 6149167 (-) True G22470
TU26972 lncRNA upstream 105512 6621935 ~ 6622442 (-) True G22650
TU27022 lncRNA upstream 159057 6675480 ~ 6675687 (-) True G22695
TU27026 lncRNA upstream 167031 6683454 ~ 6683730 (-) True G22699
TU27070 lncRNA upstream 201852 6718275 ~ 6765692 (-) True G22743
TU27226 lncRNA upstream 283095 6799518 ~ 6800819 (-) True G22896
XM_026923858.2 mRNA downstream 41231 6433919 ~ 6462290 (-) True LOC113532448
XM_026926155.2 mRNA downstream 89911 6400416 ~ 6413610 (-) True fam83c
XM_026935885.2 mRNA downstream 140686 6324114 ~ 6362835 (-) True mmp24
XM_026915885.2 mRNA downstream 190110 6305172 ~ 6313411 (-) True eif6
XM_026946617.2 mRNA downstream 294855 6205304 ~ 6208666 (-) False LOC113546630
XM_026920606.2 mRNA upstream 11186 6527609 ~ 6537373 (-) True sdc4
XM_026928164.2 mRNA upstream 32932 6549355 ~ 6555184 (-) False oser1
XM_026928077.2 mRNA upstream 32932 6549355 ~ 6555170 (-) True oser1
XM_034310019.1 mRNA upstream 32932 6549355 ~ 6555102 (-) False oser1
XM_026921138.2 mRNA upstream 62189 6578612 ~ 6602109 (-) False rbpjl
TU26888 other downstream 23510 6479402 ~ 6480011 (-) True G22591
XR_004577391.1 other downstream 426644 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 967461 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 967514 5534124 ~ 5536007 (-) False romo1
XR_003403146.2 other downstream 1302309 5111462 ~ 5201212 (-) True LOC113530384
XR_004580309.1 other upstream 1746196 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 1964628 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 1964628 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 1964628 8481051 ~ 8484114 (-) False tcta
TU28673 other upstream 2919140 9435563 ~ 9441810 (-) False tusc2a

Expression Profile