tomm34 (tomm34,LOC100305086)


Basic Information

Item Value
gene id tomm34
gene name tomm34,LOC100305086
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6181028 ~ 6195188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921368.2
CGCTTAATGACCCCCTGCGCCAggaactgaaactgaaatgtgaGCCGCTGCTGGGAAAGCGGAGCTAACGCTAGCTTCTCTCGCCTGCGTGCTCTGGAACGACTCCGCTAATTACACAGCTGAGCAACAACAGTCCGTAATGTTCATTTAGTTCATGCGGTATTATGTCTAGTTTGAAGATTTTCGATTAATACTTCCTTCTTCTTCCTAGTTAACGTCAGACAAGCCGCTTTTCTCCATTAGTTCATTTAGCTGAGCAGCTAGCTGCACATTTAGGTGTTAACCCGGCGTCTGGGTTTCTGTGTTACTCCAAGCTTACAGTTACTTAATAAATCAGTCGCTCGGTGTTTATCGTTTATAATTCACCCTACATCAGCCAGCAACATTTAAGCAGGTATCATGCCTCAGAAGCGGCGCTCACAGTCTTGGCAAGAGCTGAAACAAGCTGGTAATGACTGCTTTAAGACCGGACAATATGGAGACGCCATCTCTTTGTACAGCCAAACCATCGAGGTGCTGAAGAAATCAGgtcAGAAGAACCAGGAAGATCTCGGTATTTTATACTCAAATCGGGCAGCCAGTTACTTGAAAGATGGAAACTGCAGTGAATGCATTAAGGACTGCTCGGTATCTTTGGAACTGGTTCCATTTGGGATTAAATCACTGTTACGCCGTGCTGCAGCTTATGAAGCTGTGGAAAGATACAGACAAGCCTATGTAGACTATAAAACAGCCTTACAGATCGACTGCAACCTGCCTGCAGCTCATGATGGAACCAACAGaATGACAAAGGCACTGACAGAGATGGATGGACCATCTTGGCGAGAAAAGCTTCCTCCTATCCCGACTGTACCCATGCCAGTAAAAGAGAAATTCTTGCGAACTGCAAACTCGACTGTGACTGCACAACAGAACAACCTAAAcggaaataaacaaaTCGGTGGTGATGTGAAAAAGGCCAAACTGCTAAAGGAGGAGGGGAATGCATTTGTGAAGAAGGGACAGCATAAGAAGGCAGTGGAGAAAtacacacaatctctcagccAAGACCCCACTGAGGTCACAACCTACACAAACAGGGCTCTGTGCTATCTGTCACTAAAAATGTATCAGGAAGCAGTGAAAGATTGTGAAGAGGCTCTTCAGCTGGATCCGGCTAACATTAAAGCCCTGTACAGACGTGCACAGGCACACAAGGAGCTTAAGAACAAGAGAACTTGTGTTGAGGATCTCAACAGCTTGCTCAAAATAGAGCCCAACAACTCTGCTGCACAGAAGCTACTACAAGAAGTACTGAGGATGAAATAACCACCTTCTTTTTTTGCAACGCCTTAAGTGCCTCAAGTTAACCCAGTTCTCAGATCTGCACCACTTCTTTGACACATTCAGACTTGTTAGTTCTAGATGGATGTTTTGGAAGTGGCAAATTTCATATCATGTCATGTCCATATGTATTGAATCAGCTTcctattatttaaatttatgggGTGTCTTTTTGTCTACACATACTGATCACAACTGTTTGTCAGAAATGAACTCTCAATAGCCTAGTTGAATAAGGGTTTGTTATGCAATTAATGTGTACTGTCATTACAGTGCAAGCGTTTGTACATTTATCAGGGTTcatatacatttaaaacttGTCAatcttgttaaataattttttccgTCCATATCTGCTCAATGTTAGCATTTGGCTATGGTAAGGGAAATCATAAATCcccacatgtaaaaaaaaaa
>XM_026921377.2
CCTGAGCGCTTAATGACCCCCTGCGCCAggaactgaaactgaaatgtgaGCCGCTGCTGGGAAAGCGGAGCTAACGCTAGCTTCTCTCGCCTGCGTGCTCTGGAACGACTCCGCTAATTACACAGCTGAGCAACAACAGTCCGTAATGTTCATTTAGTTCATGCGGTATTATGTCTAGTTTGAAGATTTTCGATTAATACTTCCTTCTTCTTCCTAGTTAACGTCAGACAAGCCGCTTTTCTCCATTAGTTCATTTAGCTGAGCAGCTAGCTGCACATTTAGGTGTTAACCCGGCGTCTGGGTTTCTGTGTTACTCCAAGCTTACAGTTACTTAATAAATCAGTCGCTCGGTGTTTATCGTTTATAATTCACCCTACATCAGCCAGCAACATTTAAGGTATCATGCCTCAGAAGCGGCGCTCACAGTCTTGGCAAGAGCTGAAACAAGCTGGTAATGACTGCTTTAAGACCGGACAATATGGAGACGCCATCTCTTTGTACAGCCAAACCATCGAGGTGCTGAAGAAATCAGgtcAGAAGAACCAGGAAGATCTCGGTATTTTATACTCAAATCGGGCAGCCAGTTACTTGAAAGATGGAAACTGCAGTGAATGCATTAAGGACTGCTCGGTATCTTTGGAACTGGTTCCATTTGGGATTAAATCACTGTTACGCCGTGCTGCAGCTTATGAAGCTGTGGAAAGATACAGACAAGCCTATGTAGACTATAAAACAGCCTTACAGATCGACTGCAACCTGCCTGCAGCTCATGATGGAACCAACAGaATGACAAAGGCACTGACAGAGATGGATGGACCATCTTGGCGAGAAAAGCTTCCTCCTATCCCGACTGTACCCATGCCAGTAAAAGAGAAATTCTTGCGAACTGCAAACTCGACTGTGACTGCACAACAGAACAACCTAAAcggaaataaacaaaTCGGTGGTGATGTGAAAAAGGCCAAACTGCTAAAGGAGGAGGGGAATGCATTTGTGAAGAAGGGACAGCATAAGAAGGCAGTGGAGAAAtacacacaatctctcagccAAGACCCCACTGAGGTCACAACCTACACAAACAGGGCTCTGTGCTATCTGTCACTAAAAATGTATCAGGAAGCAGTGAAAGATTGTGAAGAGGCTCTTCAGCTGGATCCGGCTAACATTAAAGCCCTGTACAGACGTGCACAGGCACACAAGGAGCTTAAGAACAAGAGAACTTGTGTTGAGGATCTCAACAGCTTGCTCAAAATAGAGCCCAACAACTCTGCTGCACAGAAGCTACTACAAGAAGTACTGAGGATGAAATAACCACCTTCTTTTTTTGCAACGCCTTAAGTGCCTCAAGTTAACCCAGTTCTCAGATCTGCACCACTTCTTTGACACATTCAGACTTGTTAGTTCTAGATGGATGTTTTGGAAGTGGCAAATTTCATATCATGTCATGTCCATATGTATTGAATCAGCTTcctattatttaaatttatgggGTGTCTTTTTGTCTACACATACTGATCACAACTGTTTGTCAGAAATGAACTCTCAATAGCCTAGTTGAATAAGGGTTTGTTATGCAATTAATGTGTACTGTCATTACAGTGCAAGCGTTTGTACATTTATCAGGGTTcatatacatttaaaacttGTCAatcttgttaaataattttttccgTCCATATCTGCTCAATGTTAGCATTTGGCTATGGTAAGGGAAATCATAAATCcccacatgtaaaaaaaaaa

Function

symbol description
tomm34 Predicted to enable heat shock protein binding activity. Predicted to be involved in protein targeting to mitochondrion. Predicted to be active in cytosol and mitochondrion. Is expressed in alar plate midbrain region; myotome; optic tectum; optic vesicle; and retina. Orthologous to human TOMM34 (translocase of outer mitochondrial membrane 34).

NR:

description
mitochondrial import receptor subunit TOM34

GO: NA

KEGG:

id description
K17766 TOM34; mitochondrial import receptor subunit TOM34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921368.2 False 1740 mRNA 0.43 8 6181028 6195182
XM_026921377.2 True 1743 mRNA 0.43 8 6181028 6195188

Neighbor

gene id symbol gene type direction distance location
LOC117599288 NA coding downstream 20354 6151401 ~ 6160674 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding downstream 62460 6055822 ~ 6118568 (-)
psmf1 psmf1,LOC107580402 coding downstream 191656 5982584 ~ 5989372 (-)
chd6 chd6,LOC107666014 coding downstream 317595 5761737 ~ 5863433 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding downstream 501069 5659803 ~ 5679959 (-)
eif6 eif6,LOC107723919 coding upstream 109984 6305172 ~ 6313411 (-)
mmp24 mmp24,LOC107723920,LOC107587563,LOC107696473,LOC107666082 coding upstream 128926 6324114 ~ 6362835 (-)
fam83c fam83c coding upstream 205228 6400416 ~ 6413610 (-)
LOC113532448 LOC108272058,LOC108411580,LOC107696472,LOC107723922,LOC107708114,LOC106582647,LOC107587565,LOC107666149,LOC107595422 coding upstream 238731 6433919 ~ 6462290 (-)
gdf5 gdf5 coding upstream 308333 6503521 ~ 6516423 (-)
G22470 NA non-coding downstream 31861 6148946 ~ 6149167 (-)
G22367 NA non-coding downstream 137276 6043116 ~ 6043752 (-)
G22345 NA non-coding downstream 190833 5989970 ~ 5990195 (-)
LOC117595835 NA non-coding downstream 290196 5889282 ~ 5890832 (-)
G22237 NA non-coding downstream 310327 5870500 ~ 5870701 (-)
G22478 NA non-coding upstream 34572 6229760 ~ 6229969 (-)
G22539 NA non-coding upstream 87927 6283115 ~ 6283948 (-)
G22538 NA non-coding upstream 102934 6298122 ~ 6301047 (-)
G22650 NA non-coding upstream 426747 6621935 ~ 6622442 (-)
G22695 NA non-coding upstream 480292 6675480 ~ 6675687 (-)
LOC117596222 NA other downstream 104151 6074035 ~ 6076877 (-)
blcap blcap,bc10 other downstream 215845 5956639 ~ 5965183 (-)
romo1 romo1,LOC102788570 other downstream 644968 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 766942 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 979816 5111462 ~ 5201212 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 10096 6205284 ~ 6208666 (-)
G22591 NA other upstream 284214 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2065297 8260485 ~ 8265229 (-)
arl6ip5a arl6ip5,LOC107680705,LOC107750278,LOC107599422,LOC108424109,LOC107667022,LOC107713508,LOC107584514 other upstream 2148436 8343624 ~ 8351694 (-)
tcta glyctk,tcta,LOC106582802,LOC106565977 other upstream 2284186 8479374 ~ 8484181 (-)

Expression


Co-expression Network