RNA id: XM_026921368.2


Basic Information

Item Value
RNA id XM_026921368.2
length 1740
RNA type mRNA
GC content 0.43
exon number 8
gene id tomm34
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6181028 ~ 6195188 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCTTAATGACCCCCTGCGCCAggaactgaaactgaaatgtgaGCCGCTGCTGGGAAAGCGGAGCTAACGCTAGCTTCTCTCGCCTGCGTGCTCTGGAACGACTCCGCTAATTACACAGCTGAGCAACAACAGTCCGTAATGTTCATTTAGTTCATGCGGTATTATGTCTAGTTTGAAGATTTTCGATTAATACTTCCTTCTTCTTCCTAGTTAACGTCAGACAAGCCGCTTTTCTCCATTAGTTCATTTAGCTGAGCAGCTAGCTGCACATTTAGGTGTTAACCCGGCGTCTGGGTTTCTGTGTTACTCCAAGCTTACAGTTACTTAATAAATCAGTCGCTCGGTGTTTATCGTTTATAATTCACCCTACATCAGCCAGCAACATTTAAGCAGGTATCATGCCTCAGAAGCGGCGCTCACAGTCTTGGCAAGAGCTGAAACAAGCTGGTAATGACTGCTTTAAGACCGGACAATATGGAGACGCCATCTCTTTGTACAGCCAAACCATCGAGGTGCTGAAGAAATCAGgtcAGAAGAACCAGGAAGATCTCGGTATTTTATACTCAAATCGGGCAGCCAGTTACTTGAAAGATGGAAACTGCAGTGAATGCATTAAGGACTGCTCGGTATCTTTGGAACTGGTTCCATTTGGGATTAAATCACTGTTACGCCGTGCTGCAGCTTATGAAGCTGTGGAAAGATACAGACAAGCCTATGTAGACTATAAAACAGCCTTACAGATCGACTGCAACCTGCCTGCAGCTCATGATGGAACCAACAGaATGACAAAGGCACTGACAGAGATGGATGGACCATCTTGGCGAGAAAAGCTTCCTCCTATCCCGACTGTACCCATGCCAGTAAAAGAGAAATTCTTGCGAACTGCAAACTCGACTGTGACTGCACAACAGAACAACCTAAAcggaaataaacaaaTCGGTGGTGATGTGAAAAAGGCCAAACTGCTAAAGGAGGAGGGGAATGCATTTGTGAAGAAGGGACAGCATAAGAAGGCAGTGGAGAAAtacacacaatctctcagccAAGACCCCACTGAGGTCACAACCTACACAAACAGGGCTCTGTGCTATCTGTCACTAAAAATGTATCAGGAAGCAGTGAAAGATTGTGAAGAGGCTCTTCAGCTGGATCCGGCTAACATTAAAGCCCTGTACAGACGTGCACAGGCACACAAGGAGCTTAAGAACAAGAGAACTTGTGTTGAGGATCTCAACAGCTTGCTCAAAATAGAGCCCAACAACTCTGCTGCACAGAAGCTACTACAAGAAGTACTGAGGATGAAATAACCACCTTCTTTTTTTGCAACGCCTTAAGTGCCTCAAGTTAACCCAGTTCTCAGATCTGCACCACTTCTTTGACACATTCAGACTTGTTAGTTCTAGATGGATGTTTTGGAAGTGGCAAATTTCATATCATGTCATGTCCATATGTATTGAATCAGCTTcctattatttaaatttatgggGTGTCTTTTTGTCTACACATACTGATCACAACTGTTTGTCAGAAATGAACTCTCAATAGCCTAGTTGAATAAGGGTTTGTTATGCAATTAATGTGTACTGTCATTACAGTGCAAGCGTTTGTACATTTATCAGGGTTcatatacatttaaaacttGTCAatcttgttaaataattttttccgTCCATATCTGCTCAATGTTAGCATTTGGCTATGGTAAGGGAAATCATAAATCcccacatgtaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26760 lncRNA downstream 31861 6148946 ~ 6149167 (-) True G22470
TU26653 lncRNA downstream 137276 6043116 ~ 6043752 (-) True G22367
TU26629 lncRNA downstream 190833 5989970 ~ 5990195 (-) True G22345
TU26606 lncRNA downstream 215845 5957026 ~ 5965183 (-) False blcap
TU26749 lncRNA upstream 10102 6205284 ~ 6208654 (-) True LOC113546630
TU26768 lncRNA upstream 34578 6229760 ~ 6229969 (-) True G22478
TU26833 lncRNA upstream 87933 6283115 ~ 6283948 (-) True G22539
TU26832 lncRNA upstream 102940 6298122 ~ 6301047 (-) True G22538
TU26972 lncRNA upstream 426753 6621935 ~ 6622442 (-) True G22650
XM_034312125.1 mRNA downstream 20354 6151401 ~ 6160674 (-) True LOC117599288
XM_026927486.2 mRNA downstream 62460 6055822 ~ 6118568 (-) True rims4
XM_034300540.1 mRNA downstream 104151 6074035 ~ 6076877 (-) True LOC117596222
XM_026937756.2 mRNA downstream 191656 5982584 ~ 5989372 (-) True psmf1
XM_026920539.2 mRNA downstream 215892 5957016 ~ 5965136 (-) False blcap
XM_026946617.2 mRNA upstream 10122 6205304 ~ 6208666 (-) False LOC113546630
XM_026915885.2 mRNA upstream 109990 6305172 ~ 6313411 (-) True eif6
XM_026935885.2 mRNA upstream 128932 6324114 ~ 6362835 (-) True mmp24
XM_026926155.2 mRNA upstream 205234 6400416 ~ 6413610 (-) True fam83c
XM_026923858.2 mRNA upstream 238737 6433919 ~ 6462290 (-) True LOC113532448
XR_004577391.1 other downstream 104151 6074035 ~ 6076877 (-) False LOC117596222
TU26421 other downstream 644968 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 645021 5534124 ~ 5536007 (-) False romo1
XR_003403146.2 other downstream 979816 5111462 ~ 5201212 (-) True LOC113530384
TU26888 other upstream 284220 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2067437 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2285869 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2285869 8481051 ~ 8484181 (-) False tcta
TU28036 other upstream 2285869 8481051 ~ 8484114 (-) False tcta

Expression Profile