mtss1 (mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179)


Basic Information

Item Value
gene id mtss1
gene name mtss1,LOC108273055,LOC108433704,LOC107708130,LOC107685817,LOC107554179
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5594109 ~ 5631257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924211.2
GGATCACAAATGACTGCCAGTGCACTGCAGAGGGTGGTATAAGCCAGCGCGGCGCTTCCTGAGTGCTCCTCTTTAGGGAAGAGGGAGCCGATTGGGATACAACCCGGGAGCCGCTTACACGCACGCAGGCAGCGGAGAGGGACAGAGTGCGTGGAGCGGAGTGGAAAGAATTGTGTCAGTGTTTCTGTGGAACACAGCCGCATTATTCGCTTAAACAGGAGTCTGAAACGGCTGAAAATCACTTCAGATCACCGAAGAAATTCGACGCCACCTGGATAAAGTGGACGAGAAAACAGGATGAATCTGAAACGAACTGGCTGAAGTCATTATTGATCGATTGGTCTCCTGGTTGTGAAGGTTAGGAAGTGGCCAGGCGGCTTCCCCGCGCCTTCAGCGCTTCAGCAGAGTCTCCTGCGGTTAGGACGCGACTTCGCGGGTTAAATGCGACTTGCGGACCGCTCGCGGCTCTTTTAAGGCGGTTGTAGACTTTTTATGGCCAGCAAACGCGATGAATTTACCGCGGTTTACATTTCATCAAGCTAGTAGTAGAAGCTAGTTAGCCGGCTAGCAACCCAGTGCTAACTGTGCTATCCGAGATATACGCAGTTTCCCACTTTATTTTGCTCCTTTATTGTAACATTCCCCGTTTCCCGGGCAGTCAGCTAACGTTATAGACAGtgtcttttaaaataataatttcagtgaAAAAGCTTTTGTTCACAAGAAGACAGCTGCGTTTTGGGAGCTTTTTTCGCTCGTGGAAAAATGGATGCGGTCATGGAGAAGGAGTGCAGCGCTTTGGGAGGGCTCTTCCAGTCCATCATGAACGACATGAAGGCCAGTTACCCTGCCTGGGAGGACTTTGTTACGAAAGGGGCCAAGTTACAGTCTCAGCTAAGGACAACCATCATTGTTATTGGCTCATTTCTGGATGCTTTCCAGAAGGTTGCTGATATTGCAACTGGAACACGAGGGGCAACAAAGGAAATCGGCTCAGCATTGACCAGAATGTGCATGAGACATAGAAGTATTGAGAACAAACTCAAACTCTTCACTACCGCTTTCATGGATAACCTGATCAGTCCGCTGGAGCTGACGTTGGAGGAGTGGAAAAAAGTGGCCAGTCAGCTTGATAAGGATCATGCTAAAGAATATAAGAAGGCACGAGCAGACATCAGGAAGAAATCATCTGATACAATCAAACTGcagaagaaagtaaaaaaaggTAAGGATGAGGTGCGGATGCAGTTGGACAGTGCATTGCACGATGTAAACACTCGCTATACTGAGTtagaagagacagagaagagagctGTGTGCAGAGCGCTCATTGAGGAAAGAGGACGCTTCTGCTCCTTTGTTACAATGCTAAAACCTGTTCTTGATGAGGAGATAAGTATGCTTGGTGAAGTAACACATCTGCAGTCAATTTTTGAAGACCTTTGTAACCTGACAGTAGATCCCAGTGCTTTACCACCTGCTAGTGAACAGGTTATCCTTGACCTGAAAGGTTCTGAATACACCTACGCATTCCAGACTCCACCTGCATCTCCTAGCAACACACTGTCACGCAAAAGCAGCATTAGcagTAACTATGCCTCAGTGCGTCACGTGCCCTCTTTGGACTCTATCTCCAGTGTTATGGATGGCCTGCATTTGCAAGTCCAAGAAGTAGGACAGGAGCAGAGTCACAATGTCCCTGGCAAAGAGAATGGCTCCTCTGTGCCTCTTCCACACCAAGTTTACAGCAGTTATGGGGAAAGAGCTAGAGCCCAGTCCACATCAGGAAAGCCGAAGACAGCCAGAGAGCAACTAGCTCTGACCTTAGCAGGTGCACTCAACTCAGAGACTCCTCACACTAGTCGTGACTCACTGCACTGCTCCAGTGGATACAGTACCCAGACAACAACACCATCCTGTTCTGAAGATACAATACCCTCACAGCATGCAATAAAGAAAGAGCCTCCTCTATATGACTATGATTATATCTCCCTCCACGGAGGCGACGATACCCCCCGTCCATCTGATTTTGACAAATCCTGCACGATTCCACGTAACAGCGAGCTGAGCCTAAACTACCGTAAACTGTTGCAGAGCAAGAGACCAGCGTCCACCGTGAGCCTGCTGACTGAGCCTGAGGCCCTACTGCTGCATCAGCCCCACACAGCCACCATCCGGCGTAAACCATCCAGCAAAGCCAACCTTCGTCGTGGCACCATCAGTGGAGGAGTGCCCATCCCCATCTCCACACCACAGGTGCCACTGAAGCCATCTACATCCCCAGCAGGCTGGGCTCCAGGCCGTAGTGGCAGTGAGGAGGCAGTGTGCCCACAAGTGCCCCCTCAAACTGCTCGACACCCCAGCTCGGATTTGGCACaagctaaacacacactctgcacctCTACCCAAAATATGAGTACATTGCCAACCCCATACTATGCGATGTTCCCTGGGCAACCACCAGTAGGCATCACAGAGCAAATCTACCAAACTAGCAAGCAACAGCAAAGACAGTTCCAATACCACAATGACAATCATCAACAGTACAACCAGAAACAACGGCAGTATCACCAAGAGTACAACAAACAGGAGCACCCTGTACAATATCAGCAACAGTACAATCAAGCACAACAGGAGCCACAATATCATCAACAGTACATCCAAGCACAACACCAGCACCCGCATGAACATCACTACAAGCAACAGTATCAGCAACAGGCACAGCATGTACCAGCTCAGCATCCAGTCCAGCAGCAACAGccaaatcaacaaaaacaacagcagtgcCGACTACCTCAACAGAATGCTGCACTACAGTGCTGGGCATCTGCTCCAGCTCCAGACACTGCAAATCTTTCAGATGACCCTAATGATTCCAATCAGATGCCAAGTGGCAGTGATATGCTAAGCATGATCCGCAGAGGGGTGAAACTCCGACGCACACTCACTAACGATCGCTCAGCACCTCTCATCACTACCAACTATCTCAACTGAAGATTATTTTCCGTGCTTTAGgaaattaccttttttttttttttttttttttttttttttttttttaaattttacttttttctccatttttataAGCTTCCCATTAGGGTTAGACAGTCTGCTTTTCTACAAAAATGACTTTATTCAGTTACTTAATTATGACTTTGTGGCACTGGTGTGTCCATATGAATGTCAGCTTTCGTATGctcaattttattatattcttattgttagatatgaaaaaatgacaatttagagaaaatgatgttttaggttggatttgtttgatttgattaaTTTGTGTACTTTTGTAGAGATTTAACTGAAGACTGACAGCTCCATTGCCTttactgcctgaagtctggttTATTTAAGTGAATGAGTGGAGTGCAGATATGTTGATAAAGTACCGTGTGGAGAATGTGGCCATTCTTTCATTGCTTGTAATTAATCGCTGTGGCTATATATTCAATCTGCTAGATTTTGCAATCAACTGTATGACTTCTGTTCACCAAAGTTTTGAAAAGTTAGGCTGTTCTAAAACACAATGTGGCAACAAACATTactgaaattttaataatttactttattgTTAGGTGATCAGACTAAGAATAGATACTGAATTCTggattttttcctcaacatttttatttaaataattgttcattattttttctgtaatttatctgaaatgctttctttcactttttctttattttttttaaacaccattCAGGATAAGTGTTACAGAATTTTTGACACTATAAACTGTACACTGCCAACTGTTAGAGGTGATTTTGTCTTTgagcaatatactgtacatgtctACATATTCTAAAAACAGTCACTATTAGTAATTGTGTAGCTTTTTTAAATGGTCACTGTTGAAATGCCTTGTTTTTCCACTTGGTGAAATTTGCATCTTCTATacttctgaaatgaaaaaagaaatgagtgtAAGAGAAGCTTGCAGTTTTGAGTAGCTCAAGCCACTCGCTTCCCCTTATGGCACACATGTTGGAATCCTAATCTGCCTTATAGGAGAACAAACTGAGAGTTTGCATTGTTGCAGTTTCCAAAAACATTTGATAGGTTTAGACATGCTATATTATGCTGAATGGATCTTTATCTTAAATAGTATACCTATATAGTTCTGTATTTTTCCTTAATTTGTCCTTGGCATTTGAGATGAAAGCTGTGCCATTTATTGTAAAGAAATTTTTATGTAGTTTGAACTTTTATCATTTAAAGTGACTGCTCTTTTTATCT
>XM_026924219.2
ATCACAAATGACTGCCAGTGCACTGCAGAGGGTGGTATAAGCCAGCGCGGCGCTTCCTGAGTGCTCCTCTTTAGGGAAGAGGGAGCCGATTGGGATACAACCCGGGAGCCGCTTACACGCACGCAGGCAGCGGAGAGGGACAGAGTGCGTGGAGCGGAGTGGAAAGAATTGTGTCAGTGTTTCTGTGGAACACAGCCGCATTATTCGCTTAAACAGGAGTCTGAAACGGCTGAAAATCACTTCAGATCACCGAAGAAATTCGACGCCACCTGGATAAAGTGGACGAGAAAACAGGATGAATCTGAAACGAACTGGCTGAAGTCATTATTGATCGATTGGTCTCCTGGTTGTGAAGGTTAGGAAGTGGCCAGGCGGCTTCCCCGCGCCTTCAGCGCTTCAGCAGAGTCTCCTGCGGTTAGGACGCGACTTCGCGGGTTAAATGCGACTTGCGGACCGCTCGCGGCTCTTTTAAGGCGGTTGTAGACTTTTTATGGCCAGCAAACGCGATGAATTTACCGCGGTTTACATTTCATCAAGCTAGTAGTAGAAGCTAGTTAGCCGGCTAGCAACCCAGTGCTAACTGTGCTATCCGAGATATACGCAGTTTCCCACTTTATTTTGCTCCTTTATTGTAACATTCCCCGTTTCCCGGGCAGTCAGCTAACGTTATAGACAGtgtcttttaaaataataatttcagtgaAAAAGCTTTTGTTCACAAGAAGACAGCTGCGTTTTGGGAGCTTTTTTCGCTCGTGGAAAAATGGATGCGGTCATGGAGAAGGAGTGCAGCGCTTTGGGAGGGCTCTTCCAGTCCATCATGAACGACATGAAGGCCAGTTACCCTGCCTGGGAGGACTTTGTTACGAAAGGGGCCAAGTTACAGTCTCAGCTAAGGACAACCATCATTGTTATTGGCTCATTTCTGGATGCTTTCCAGAAGGTTGCTGATATTGCAACTGGAACACGAGGGGCAACAAAGGAAATCGGCTCAGCATTGACCAGAATGTGCATGAGACATAGAAGTATTGAGAACAAACTCAAACTCTTCACTACCGCTTTCATGGATAACCTGATCAGTCCGCTGGAGCTGACGTTGGAGGAGTGGAAAAAAGTGGCCAGTCAGCTTGATAAGGATCATGCTAAAGAATATAAGAAGGCACGAGCAGACATCAGGAAGAAATCATCTGATACAATCAAACTGcagaagaaagtaaaaaaaggTAAGGATGAGGTGCGGATGCAGTTGGACAGTGCATTGCACGATGTAAACACTCGCTATACTGAGTtagaagagacagagaagagagctGTGTGCAGAGCGCTCATTGAGGAAAGAGGACGCTTCTGCTCCTTTGTTACAATGCTAAAACCTGTTCTTGATGAGGAGATAAGTATGCTTGGTGAAGTAACACATCTGCAGTCAATTTTTGAAGACCTTTGTAACCTGACAGTAGATCCCAGTGCTTTACCACCTGCTAGTGAACAGGTTATCCTTGACCTGAAAGGTTCTGAATACACCTACGCATTCCAGACTCCACCTGCATCTCCTAGCAACACACTGTCACGCAAAAGCAGCATTAGcagTAACTATGCCTCAGTGCGTCACGTGCCCTCTTTGGACTCTATCTCCAGTGTTATGGATGGCCTGCATTTGCAAGTCCAAGAAGTAGGACAGGAGCAGAGTCACAATGTCCCTGGCAAAGAGAATGGCTCCTCTGTGCCTCTTCCACACCAAGTTTACAGCAGTTATGGGGAAAGAGCTAGAGCCCAGTCCACATCAGGAAAGCCGAAGACAGCCAGAGAGCAACTAGCTCTGACCTTAGCAGGTGCACTCAACTCAGAGACTCCTCACACTAGTCGTGACTCACTGCACTGCTCCAGTGGATACAGTACCCAGACAACAACACCATCCTGTTCTGAAGATACAATACCCTCACAGCATGACTATGATTATATCTCCCTCCACGGAGGCGACGATACCCCCCGTCCATCTGATTTTGACAAATCCTGCACGATTCCACGTAACAGCGAGCTGAGCCTAAACTACCGTAAACTGTTGCAGAGCAAGAGACCAGCGTCCACCGTGAGCCTGCTGACTGAGCCTGAGGCCCTACTGCTGCATCAGCCCCACACAGCCACCATCCGGCGTAAACCATCCAGCAAAGCCAACCTTCGTCGTGGCACCATCAGTGGAGGAGTGCCCATCCCCATCTCCACACCACAGGTGCCACTGAAGCCATCTACATCCCCAGCAGGCTGGGCTCCAGGCCGTAGTGGCAGTGAGGAGGCAGTGTGCCCACAAGTGCCCCCTCAAACTGCTCGACACCCCAGCTCGGATTTGGCACaagctaaacacacactctgcacctCTACCCAAAATATGAGTACATTGCCAACCCCATACTATGCGATGTTCCCTGGGCAACCACCAGTAGGCATCACAGAGCAAATCTACCAAACTAGCAAGCAACAGCAAAGACAGTTCCAATACCACAATGACAATCATCAACAGTACAACCAGAAACAACGGCAGTATCACCAAGAGTACAACAAACAGGAGCACCCTGTACAATATCAGCAACAGTACAATCAAGCACAACAGGAGCCACAATATCATCAACAGTACATCCAAGCACAACACCAGCACCCGCATGAACATCACTACAAGCAACAGTATCAGCAACAGGCACAGCATGTACCAGCTCAGCATCCAGTCCAGCAGCAACAGccaaatcaacaaaaacaacagcagtgcCGACTACCTCAACAGAATGCTGCACTACAGTGCTGGGCATCTGCTCCAGCTCCAGACACTGCAAATCTTTCAGATGACCCTAATGATTCCAATCAGATGCCAAGTGGCAGTGATATGCTAAGCATGATCCGCAGAGGGGTGAAACTCCGACGCACACTCACTAACGATCGCTCAGCACCTCTCATCACTACCAACTATCTCAACTGAAGATTATTTTCCGTGCTTTAGgaaattaccttttttttttttttttttttttttttttttttttttaaattttacttttttctccatttttataAGCTTCCCATTAGGGTTAGACAGTCTGCTTTTCTACAAAAATGACTTTATTCAGTTACTTAATTATGACTTTGTGGCACTGGTGTGTCCATATGAATGTCAGCTTTCGTATGctcaattttattatattcttattgttagatatgaaaaaatgacaatttagagaaaatgatgttttaggttggatttgtttgatttgattaaTTTGTGTACTTTTGTAGAGATTTAACTGAAGACTGACAGCTCCATTGCCTttactgcctgaagtctggttTATTTAAGTGAATGAGTGGAGTGCAGATATGTTGATAAAGTACCGTGTGGAGAATGTGGCCATTCTTTCATTGCTTGTAATTAATCGCTGTGGCTATATATTCAATCTGCTAGATTTTGCAATCAACTGTATGACTTCTGTTCACCAAAGTTTTGAAAAGTTAGGCTGTTCTAAAACACAATGTGGCAACAAACATTactgaaattttaataatttactttattgTTAGGTGATCAGACTAAGAATAGATACTGAATTCTggattttttcctcaacatttttatttaaataattgttcattattttttctgtaatttatctgaaatgctttctttcactttttctttattttttttaaacaccattCAGGATAAGTGTTACAGAATTTTTGACACTATAAACTGTACACTGCCAACTGTTAGAGGTGATTTTGTCTTTgagcaatatactgtacatgtctACATATTCTAAAAACAGTCACTATTAGTAATTGTGTAGCTTTTTTAAATGGTCACTGTTGAAATGCCTTGTTTTTCCACTTGGTGAAATTTGCATCTTCTATacttctgaaatgaaaaaagaaatgagtgtAAGAGAAGCTTGCAGTTTTGAGTAGCTCAAGCCACTCGCTTCCCCTTATGGCACACATGTTGGAATCCTAATCTGCCTTATAGGAGAACAAACTGAGAGTTTGCATTGTTGCAGTTTCCAAAAACATTTGATAGGTTTAGACATGCTATATTATGCTGAATGGATCTTTATCTTAAATAGTATACCTATATAGTTCTGTATTTTTCCTTAATTTGTCCTTGGCATTTGAGATGAAAGCTGTGCCATTTATTGTAAAGAAATTTTTATGTAGTTTGAACTTTTATCATTTAAAGTGACTGCTCTTTTTATCT

Function

symbol description
mtss1 Predicted to enable actin binding activity. Predicted to act upstream of or within plasma membrane organization. Orthologous to human MTSS1 (MTSS I-BAR domain containing 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924211.2 True 4263 mRNA 0.44 15 5594109 5631257
XM_026924219.2 False 4234 mRNA 0.44 14 5594109 5631255

Neighbor

gene id symbol gene type direction distance location
LOC113532874 cyc1,LOC108433700,LOC108272604,LOC107666085,LOC103023575,LOC107729751,LOC107554183,LOC108414617 coding downstream 73756 5508012 ~ 5520353 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding downstream 130983 5437548 ~ 5463126 (-)
dtd1 dtd1 coding downstream 168989 5422202 ~ 5425120 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding downstream 200588 5346109 ~ 5393521 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding downstream 269121 5264912 ~ 5324988 (-)
osgn1 LOC108272601 coding upstream 7339 5638596 ~ 5651285 (-)
pigu pigu,LOC107554168,LOC107596774,LOC107666169,LOC107708084 coding upstream 28546 5659803 ~ 5679959 (-)
chd6 chd6,LOC107666014 coding upstream 130480 5761737 ~ 5863433 (-)
psmf1 psmf1,LOC107580402 coding upstream 351327 5982584 ~ 5989372 (-)
rims4 rims4,LOC107666126,LOC107708122,LOC107696477 coding upstream 424565 6055822 ~ 6118568 (-)
G22156 NA non-coding downstream 119342 5474557 ~ 5474767 (-)
G21975 NA non-coding downstream 262971 5330826 ~ 5331138 (-)
G21963 NA non-coding downstream 268586 5325159 ~ 5325523 (-)
G21960 NA non-coding downstream 326066 5267485 ~ 5268043 (-)
G21944 NA non-coding downstream 365743 5228086 ~ 5228366 (-)
G22186 NA non-coding upstream 20618 5651875 ~ 5652106 (-)
G22188 NA non-coding upstream 26187 5657444 ~ 5657651 (-)
G22182 NA non-coding upstream 48864 5680121 ~ 5680482 (-)
G22203 LOC108272599,LOC108433672 non-coding upstream 59430 5690687 ~ 5691117 (-)
G22201 NA non-coding upstream 70360 5701617 ~ 5702754 (-)
romo1 romo1,LOC102788570 other downstream 58049 5532037 ~ 5536060 (-)
LOC113533127 NA other downstream 180023 5405967 ~ 5414086 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other downstream 392897 5111462 ~ 5201212 (-)
obsl1a obsl1 other downstream 692098 4813275 ~ 4902011 (-)
trnaf-gaa_14 NA other downstream 1261938 4332099 ~ 4332171 (-)
blcap blcap,bc10 other upstream 325382 5956639 ~ 5965183 (-)
LOC117596222 NA other upstream 442778 6074035 ~ 6076877 (-)
LOC113546630 cox6c,LOC107100236,LOC105920077,LOC108272167,LOC101061984,LOC105901862,LOC107666035 other upstream 574027 6205284 ~ 6208666 (-)
G22591 NA other upstream 848145 6479402 ~ 6480011 (-)
mitfa mitf,LOC108424034 other upstream 2629228 8260485 ~ 8265229 (-)

Expression


Co-expression Network