RNA id: XM_026924211.2


Basic Information

Item Value
RNA id XM_026924211.2
length 4263
RNA type mRNA
GC content 0.44
exon number 15
gene id mtss1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5594109 ~ 5631257 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGATCACAAATGACTGCCAGTGCACTGCAGAGGGTGGTATAAGCCAGCGCGGCGCTTCCTGAGTGCTCCTCTTTAGGGAAGAGGGAGCCGATTGGGATACAACCCGGGAGCCGCTTACACGCACGCAGGCAGCGGAGAGGGACAGAGTGCGTGGAGCGGAGTGGAAAGAATTGTGTCAGTGTTTCTGTGGAACACAGCCGCATTATTCGCTTAAACAGGAGTCTGAAACGGCTGAAAATCACTTCAGATCACCGAAGAAATTCGACGCCACCTGGATAAAGTGGACGAGAAAACAGGATGAATCTGAAACGAACTGGCTGAAGTCATTATTGATCGATTGGTCTCCTGGTTGTGAAGGTTAGGAAGTGGCCAGGCGGCTTCCCCGCGCCTTCAGCGCTTCAGCAGAGTCTCCTGCGGTTAGGACGCGACTTCGCGGGTTAAATGCGACTTGCGGACCGCTCGCGGCTCTTTTAAGGCGGTTGTAGACTTTTTATGGCCAGCAAACGCGATGAATTTACCGCGGTTTACATTTCATCAAGCTAGTAGTAGAAGCTAGTTAGCCGGCTAGCAACCCAGTGCTAACTGTGCTATCCGAGATATACGCAGTTTCCCACTTTATTTTGCTCCTTTATTGTAACATTCCCCGTTTCCCGGGCAGTCAGCTAACGTTATAGACAGtgtcttttaaaataataatttcagtgaAAAAGCTTTTGTTCACAAGAAGACAGCTGCGTTTTGGGAGCTTTTTTCGCTCGTGGAAAAATGGATGCGGTCATGGAGAAGGAGTGCAGCGCTTTGGGAGGGCTCTTCCAGTCCATCATGAACGACATGAAGGCCAGTTACCCTGCCTGGGAGGACTTTGTTACGAAAGGGGCCAAGTTACAGTCTCAGCTAAGGACAACCATCATTGTTATTGGCTCATTTCTGGATGCTTTCCAGAAGGTTGCTGATATTGCAACTGGAACACGAGGGGCAACAAAGGAAATCGGCTCAGCATTGACCAGAATGTGCATGAGACATAGAAGTATTGAGAACAAACTCAAACTCTTCACTACCGCTTTCATGGATAACCTGATCAGTCCGCTGGAGCTGACGTTGGAGGAGTGGAAAAAAGTGGCCAGTCAGCTTGATAAGGATCATGCTAAAGAATATAAGAAGGCACGAGCAGACATCAGGAAGAAATCATCTGATACAATCAAACTGcagaagaaagtaaaaaaaggTAAGGATGAGGTGCGGATGCAGTTGGACAGTGCATTGCACGATGTAAACACTCGCTATACTGAGTtagaagagacagagaagagagctGTGTGCAGAGCGCTCATTGAGGAAAGAGGACGCTTCTGCTCCTTTGTTACAATGCTAAAACCTGTTCTTGATGAGGAGATAAGTATGCTTGGTGAAGTAACACATCTGCAGTCAATTTTTGAAGACCTTTGTAACCTGACAGTAGATCCCAGTGCTTTACCACCTGCTAGTGAACAGGTTATCCTTGACCTGAAAGGTTCTGAATACACCTACGCATTCCAGACTCCACCTGCATCTCCTAGCAACACACTGTCACGCAAAAGCAGCATTAGcagTAACTATGCCTCAGTGCGTCACGTGCCCTCTTTGGACTCTATCTCCAGTGTTATGGATGGCCTGCATTTGCAAGTCCAAGAAGTAGGACAGGAGCAGAGTCACAATGTCCCTGGCAAAGAGAATGGCTCCTCTGTGCCTCTTCCACACCAAGTTTACAGCAGTTATGGGGAAAGAGCTAGAGCCCAGTCCACATCAGGAAAGCCGAAGACAGCCAGAGAGCAACTAGCTCTGACCTTAGCAGGTGCACTCAACTCAGAGACTCCTCACACTAGTCGTGACTCACTGCACTGCTCCAGTGGATACAGTACCCAGACAACAACACCATCCTGTTCTGAAGATACAATACCCTCACAGCATGCAATAAAGAAAGAGCCTCCTCTATATGACTATGATTATATCTCCCTCCACGGAGGCGACGATACCCCCCGTCCATCTGATTTTGACAAATCCTGCACGATTCCACGTAACAGCGAGCTGAGCCTAAACTACCGTAAACTGTTGCAGAGCAAGAGACCAGCGTCCACCGTGAGCCTGCTGACTGAGCCTGAGGCCCTACTGCTGCATCAGCCCCACACAGCCACCATCCGGCGTAAACCATCCAGCAAAGCCAACCTTCGTCGTGGCACCATCAGTGGAGGAGTGCCCATCCCCATCTCCACACCACAGGTGCCACTGAAGCCATCTACATCCCCAGCAGGCTGGGCTCCAGGCCGTAGTGGCAGTGAGGAGGCAGTGTGCCCACAAGTGCCCCCTCAAACTGCTCGACACCCCAGCTCGGATTTGGCACaagctaaacacacactctgcacctCTACCCAAAATATGAGTACATTGCCAACCCCATACTATGCGATGTTCCCTGGGCAACCACCAGTAGGCATCACAGAGCAAATCTACCAAACTAGCAAGCAACAGCAAAGACAGTTCCAATACCACAATGACAATCATCAACAGTACAACCAGAAACAACGGCAGTATCACCAAGAGTACAACAAACAGGAGCACCCTGTACAATATCAGCAACAGTACAATCAAGCACAACAGGAGCCACAATATCATCAACAGTACATCCAAGCACAACACCAGCACCCGCATGAACATCACTACAAGCAACAGTATCAGCAACAGGCACAGCATGTACCAGCTCAGCATCCAGTCCAGCAGCAACAGccaaatcaacaaaaacaacagcagtgcCGACTACCTCAACAGAATGCTGCACTACAGTGCTGGGCATCTGCTCCAGCTCCAGACACTGCAAATCTTTCAGATGACCCTAATGATTCCAATCAGATGCCAAGTGGCAGTGATATGCTAAGCATGATCCGCAGAGGGGTGAAACTCCGACGCACACTCACTAACGATCGCTCAGCACCTCTCATCACTACCAACTATCTCAACTGAAGATTATTTTCCGTGCTTTAGgaaattaccttttttttttttttttttttttttttttttttttttaaattttacttttttctccatttttataAGCTTCCCATTAGGGTTAGACAGTCTGCTTTTCTACAAAAATGACTTTATTCAGTTACTTAATTATGACTTTGTGGCACTGGTGTGTCCATATGAATGTCAGCTTTCGTATGctcaattttattatattcttattgttagatatgaaaaaatgacaatttagagaaaatgatgttttaggttggatttgtttgatttgattaaTTTGTGTACTTTTGTAGAGATTTAACTGAAGACTGACAGCTCCATTGCCTttactgcctgaagtctggttTATTTAAGTGAATGAGTGGAGTGCAGATATGTTGATAAAGTACCGTGTGGAGAATGTGGCCATTCTTTCATTGCTTGTAATTAATCGCTGTGGCTATATATTCAATCTGCTAGATTTTGCAATCAACTGTATGACTTCTGTTCACCAAAGTTTTGAAAAGTTAGGCTGTTCTAAAACACAATGTGGCAACAAACATTactgaaattttaataatttactttattgTTAGGTGATCAGACTAAGAATAGATACTGAATTCTggattttttcctcaacatttttatttaaataattgttcattattttttctgtaatttatctgaaatgctttctttcactttttctttattttttttaaacaccattCAGGATAAGTGTTACAGAATTTTTGACACTATAAACTGTACACTGCCAACTGTTAGAGGTGATTTTGTCTTTgagcaatatactgtacatgtctACATATTCTAAAAACAGTCACTATTAGTAATTGTGTAGCTTTTTTAAATGGTCACTGTTGAAATGCCTTGTTTTTCCACTTGGTGAAATTTGCATCTTCTATacttctgaaatgaaaaaagaaatgagtgtAAGAGAAGCTTGCAGTTTTGAGTAGCTCAAGCCACTCGCTTCCCCTTATGGCACACATGTTGGAATCCTAATCTGCCTTATAGGAGAACAAACTGAGAGTTTGCATTGTTGCAGTTTCCAAAAACATTTGATAGGTTTAGACATGCTATATTATGCTGAATGGATCTTTATCTTAAATAGTATACCTATATAGTTCTGTATTTTTCCTTAATTTGTCCTTGGCATTTGAGATGAAAGCTGTGCCATTTATTGTAAAGAAATTTTTATGTAGTTTGAACTTTTATCATTTAAAGTGACTGCTCTTTTTATCT

Function

GO:

id name namespace
GO:0046847 filopodium assembly biological_process
GO:0007165 signal transduction biological_process
GO:0017124 SH3 domain binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008093 cytoskeletal anchor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26422 lncRNA downstream 58102 5532037 ~ 5536007 (-) True romo1
TU26423 lncRNA downstream 119342 5474557 ~ 5474767 (-) True G22156
TU26253 lncRNA downstream 180043 5406935 ~ 5414066 (-) False LOC113533127
TU26201 lncRNA downstream 262971 5330826 ~ 5331138 (-) True G21975
TU26189 lncRNA downstream 268586 5325159 ~ 5325523 (-) True G21963
TU26461 lncRNA upstream 20618 5651875 ~ 5652106 (-) True G22186
TU26463 lncRNA upstream 26187 5657444 ~ 5657651 (-) True G22188
TU26456 lncRNA upstream 48864 5680121 ~ 5680482 (-) True G22182
TU26478 lncRNA upstream 59430 5690687 ~ 5691117 (-) True G22203
TU26476 lncRNA upstream 70360 5701617 ~ 5702754 (-) True G22201
XM_026915820.2 mRNA downstream 58078 5534050 ~ 5536031 (-) False romo1
XM_026924555.2 mRNA downstream 73756 5508012 ~ 5520353 (-) True LOC113532874
XM_034313028.1 mRNA downstream 130983 5437548 ~ 5463126 (-) True ahcy
XM_026922887.2 mRNA downstream 168989 5422202 ~ 5425120 (-) True dtd1
XM_026925059.2 mRNA downstream 180023 5405967 ~ 5414086 (-) True LOC113533127
XM_026917461.2 mRNA upstream 7339 5638596 ~ 5651285 (-) False osgn1
XM_026917446.2 mRNA upstream 7339 5638596 ~ 5650765 (-) True osgn1
XM_026917453.2 mRNA upstream 7339 5638596 ~ 5647769 (-) False osgn1
XM_026918763.2 mRNA upstream 28546 5659803 ~ 5679959 (-) True pigu
XM_026919444.2 mRNA upstream 130480 5761737 ~ 5863433 (-) False chd6
TU26421 other downstream 58049 5534124 ~ 5536060 (-) False romo1
TU26420 other downstream 58102 5534124 ~ 5536007 (-) False romo1
XR_003403147.2 other downstream 392897 5111462 ~ 5201212 (-) False LOC113530384
XR_003403149.2 other downstream 392897 5111462 ~ 5201212 (-) False LOC113530384
XR_003403146.2 other downstream 392897 5111462 ~ 5201212 (-) True LOC113530384
XR_004577391.1 other upstream 442778 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 848145 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2631362 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2849794 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2849794 8481051 ~ 8484181 (-) False tcta

Expression Profile