LOC113545826


Basic Information

Item Value
gene id LOC113545826
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4550571 ~ 4569672 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003404663.2
CGGAATGCAGAACACAGAACAGACGGGGTGACactagcaaccacctgggataGCACAGCAATCGCATAGCAACACCCCAGCAACCAACTGAGACAGCACAGCAGCCACCTAGCAACCCCCTACTAACTAACTGGTCCTGTAAAATCCTGTCCACCAGTACCGGTTTCCCGTGGGCTTCCCTCAGCATGGGCTGTGATTACTGCGCGTCTGCCTGATTTATGAGGCTTCTGCATGGGACACATTTGGTGGAAAACAGACCTCCCCTCCTTAAACCGACAACAGAGAGGCAGATGAAGCAAAAGAAGTGCATGGTCCAGAAAAAAGCATGGTTGAAACTTGTTCAAACACGACACTTGCCTATATTGGAAGAAAGCacattgtattaaaaaatgtgGTGGAGGACTTGAGGCCTGAGCTTGTGAGGCGGGATGCCGAGACTAAGGCCCTGAGGAGGGAGCTCCATGTCTGCAAGGAGGCATATGCAGATGCAAAAGCAGCTCTTGCAGATTTAAAACCGACTGTGCCCCCCCACCATCATCAGACTGTCCAACCGAGGTCACTACTAGCCTGAGTGGAGATGCAGACAATAGGCAACACCATCTTCTGTCGTTGCCATAGGTCCAATGGCAACAACACTGGCTGAAAATTGCCATCTCAAACTCCAGTTTTCTTGTCCCTCACCAGAGCAGCTAGAGATCCTTATGATGCAGAGTTGGGGACGGCCGTATTGATATGGTTGCTTGCTGTTCCGTGCCATTTTATCAGAGCAGCGGTATAAAGAGTGAGATGTTTCCAACTGGGATGGTTCGAGGGTCAAATCTGCATTGCCTATGAACCTAAGGCACTTTTGAAAACCGTTTCCCAGAGGATCCCCCACATGACCAACGCTGACCGAAAGCACATCAAAGAGTCAAGGAGTTGGTGGTGGTCATCAGTGCTGGGAACGTTCTTTCTCGCAGATGTGAACACAGCTCATGTGCTGCCCTTCTCACCTGCTCTCCAATCCAGTGAAATCACAGAACAAAAAATGCAAACGAATGCCCCTTCATGCTGATACACATCCATTGACATACAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003404663.2 True 1077 lncRNA 0.50 4 4550571 4569672

Neighbor

gene id symbol gene type direction distance location
LOC113545959 NA coding downstream 66657 4475852 ~ 4483914 (-)
LOC117596286 NA coding downstream 92124 4458336 ~ 4458447 (-)
LOC117596284 NA coding downstream 103092 4447367 ~ 4447479 (-)
prelid3b prelid3b,LOC107749404,LOC107556737,LOC103464385 coding downstream 185400 4359120 ~ 4365171 (-)
cldn10a cldn10a,LOC108272592,LOC108436398,LOC107551926,LOC107581434,LOC107659956,LOC107706622 coding downstream 511287 4034071 ~ 4039284 (-)
igfbp2a LOC108273244,LOC108438161 coding upstream 20712 4590384 ~ 4618467 (-)
inha inha,LOC107586362 coding upstream 147738 4717410 ~ 4719627 (-)
nufip1 nufip1 coding upstream 640824 5210496 ~ 5219287 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 695240 5264912 ~ 5324988 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding upstream 776437 5346109 ~ 5393521 (-)
G21592 NA non-coding downstream 3862 4540227 ~ 4546709 (-)
G21557 NA non-coding downstream 88555 4460931 ~ 4462016 (-)
G21555 NA non-coding downstream 99793 4450462 ~ 4450778 (-)
G21554 NA non-coding downstream 104356 4445803 ~ 4446215 (-)
G21552 rabl3 non-coding downstream 107121 4442856 ~ 4443450 (-)
G21693 NA non-coding upstream 130152 4699824 ~ 4700057 (-)
LOC113545947 NA non-coding upstream 194237 4763909 ~ 4765538 (-)
LOC113545964 NA non-coding upstream 205616 4775288 ~ 4777331 (-)
G21751 NA non-coding upstream 215161 4784833 ~ 4785735 (-)
G21810 NA non-coding upstream 256878 4826550 ~ 4826923 (-)
trnaf-gaa_14 NA other downstream 218400 4332099 ~ 4332171 (-)
G21434 NA other downstream 293484 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 772583 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 813685 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1179417 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 243603 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 541790 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 836295 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 962365 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1386967 5956639 ~ 5965183 (-)

Expression


Co-expression Network