LOC113545947


Basic Information

Item Value
gene id LOC113545947
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4763909 ~ 4765538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579646.1
TATGTTCATCTATGGTTGCTTTAGTGTTCTATGCAACGTGGTGAAAACTAGCTACCTGTGGTACAATCTGCATCTGCACATGGTGCTTGTGTGGAGGATCACGTTAGTATACgaggacttttattttgaaattgtgcTTGGAAGTACCggaaaaggagagaggagaaagaagatGGTGTGGGAGCATACGGTGAGAGCGGAGAGTTCAAAAAAGAGAGGAGCCCTGTTTCCCGTGTTTTTCTGTGGACAGGGCTGACAATTGTCGATGtaCATTTAGAAGGGTGACGCTAGGCCTGTGATCCTGcagggatgtttctgtgagaacggACTGGTGTGACCTTGAAGATGGAgttttttaagaagtatttgccacgACAATGGGCGCTGTAGAGAAGCTGGACCGAGCTTGTGCTGTCCAGAATTTTCGCTATCGGTATGACTGGGACAGTGAAAGTTAACCAGTGTGTTCCGTGGAAGATGACAGAAAGTGCTGTGATAATTCCGAACAACTGTGTTTCGGCTGAAGATGGTGAAAAGCACTGTGGTGACTCTGAGTATGTGCCACTGCTGTGAGTTTTTCTGACGTTTTGCCTCTCTTTTGAGTGAAACTGAATGACTGTATTTTTGAGCTTAATCGCCACTGATATCCAGAAGAAAGTACATGGGACTTTTTTCCATTAAAGCTGATCTGAGTTAAGTTTTTTCCCTCCATGCCGCTGATATAGTATTGTATAAGTTTTGGAAAGCTTTTCCTGAAATGTGTCCGATGGGATTGTGATATTTATGGAACATTGCTGATTGAACTGTACTGTTTATTATCTGCGCAATACATTTGAACTGTGACTATTTGAACATTGAATTTGAACTGTTTGCTGATCAAATATTGAATTTGAGTCGTTCTGAAGAAAAAGTGAAGTGATGTGTAGCCAactatggtgacccatactcggaatttgtgctctgcatttaacccattcaagtgcacacacacagtagtgaacacacacacacaccgtgaacacacacacccagagcagtgggcagctgCGGCACCTGGGGAGCAgatgggggttcggtgccttgctcaagggtctcaccatAAAGAAATGAGTAACAACAGTTTGACACAAAGTGAAACTTTATTGATTTCCATTTTTTGGCATGGTACTAGTGAAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579646.1 True 1179 lncRNA 0.43 3 4763909 4765538

Neighbor

gene id symbol gene type direction distance location
inha inha,LOC107586362 coding downstream 44282 4717410 ~ 4719627 (-)
igfbp2a LOC108273244,LOC108438161 coding downstream 145442 4590384 ~ 4618467 (-)
LOC113545959 NA coding downstream 279995 4475852 ~ 4483914 (-)
LOC117596286 NA coding downstream 305462 4458336 ~ 4458447 (-)
LOC117596284 NA coding downstream 316430 4447367 ~ 4447479 (-)
nufip1 nufip1 coding upstream 444958 5210496 ~ 5219287 (-)
bin1b bin1b,LOC108272731,LOC108436425 coding upstream 499374 5264912 ~ 5324988 (-)
atg3 atg3,LOC107659953,LOC107752093,LOC107581307,LOC107551927,LOC107713119 coding upstream 580571 5346109 ~ 5393521 (-)
dtd1 dtd1 coding upstream 656664 5422202 ~ 5425120 (-)
ahcy ahcy,LOC107666127,LOC107596784,LOC107685809,LOC107729767,LOC107554187 coding upstream 672010 5437548 ~ 5463126 (-)
G21693 NA non-coding downstream 63852 4699824 ~ 4700057 (-)
LOC113545826 NA non-coding downstream 194237 4550571 ~ 4569672 (-)
G21592 NA non-coding downstream 217200 4540227 ~ 4546709 (-)
G21557 NA non-coding downstream 301893 4460931 ~ 4462016 (-)
G21555 NA non-coding downstream 313131 4450462 ~ 4450778 (-)
LOC113545964 NA non-coding upstream 9750 4775288 ~ 4777331 (-)
G21751 NA non-coding upstream 19295 4784833 ~ 4785735 (-)
G21810 NA non-coding upstream 61012 4826550 ~ 4826923 (-)
G21815 NA non-coding upstream 131400 4896938 ~ 4897615 (-)
LOC117596013 NA non-coding upstream 174160 4939698 ~ 4942727 (-)
trnaf-gaa_14 NA other downstream 431738 4332099 ~ 4332171 (-)
G21434 NA other downstream 506822 4256668 ~ 4257087 (-)
rab22a rab22a,LOC107554197,LOC106517659,LOC108231697 other downstream 985921 3750018 ~ 3777988 (-)
npepl1 npepl1,LOC107666140,LOC107554193 other downstream 1027023 3715807 ~ 3736886 (-)
tlk1b LOC108271645,LOC108438044,LOC107557139,LOC107746598 other downstream 1392755 3348308 ~ 3371154 (-)
obsl1a obsl1 other upstream 47737 4813275 ~ 4902011 (-)
LOC113530384 LOC108272961,LOC108436439,LOC107750822,LOC107703119 other upstream 345924 5111462 ~ 5201212 (-)
LOC113533127 NA other upstream 640429 5405967 ~ 5414086 (-)
romo1 romo1,LOC102788570 other upstream 766499 5532037 ~ 5536060 (-)
blcap blcap,bc10 other upstream 1191101 5956639 ~ 5965183 (-)

Expression


Co-expression Network