RNA id: XR_004579646.1


Basic Information

Item Value
RNA id XR_004579646.1
length 1179
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC113545947
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 4763909 ~ 4765538 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATGTTCATCTATGGTTGCTTTAGTGTTCTATGCAACGTGGTGAAAACTAGCTACCTGTGGTACAATCTGCATCTGCACATGGTGCTTGTGTGGAGGATCACGTTAGTATACgaggacttttattttgaaattgtgcTTGGAAGTACCggaaaaggagagaggagaaagaagatGGTGTGGGAGCATACGGTGAGAGCGGAGAGTTCAAAAAAGAGAGGAGCCCTGTTTCCCGTGTTTTTCTGTGGACAGGGCTGACAATTGTCGATGtaCATTTAGAAGGGTGACGCTAGGCCTGTGATCCTGcagggatgtttctgtgagaacggACTGGTGTGACCTTGAAGATGGAgttttttaagaagtatttgccacgACAATGGGCGCTGTAGAGAAGCTGGACCGAGCTTGTGCTGTCCAGAATTTTCGCTATCGGTATGACTGGGACAGTGAAAGTTAACCAGTGTGTTCCGTGGAAGATGACAGAAAGTGCTGTGATAATTCCGAACAACTGTGTTTCGGCTGAAGATGGTGAAAAGCACTGTGGTGACTCTGAGTATGTGCCACTGCTGTGAGTTTTTCTGACGTTTTGCCTCTCTTTTGAGTGAAACTGAATGACTGTATTTTTGAGCTTAATCGCCACTGATATCCAGAAGAAAGTACATGGGACTTTTTTCCATTAAAGCTGATCTGAGTTAAGTTTTTTCCCTCCATGCCGCTGATATAGTATTGTATAAGTTTTGGAAAGCTTTTCCTGAAATGTGTCCGATGGGATTGTGATATTTATGGAACATTGCTGATTGAACTGTACTGTTTATTATCTGCGCAATACATTTGAACTGTGACTATTTGAACATTGAATTTGAACTGTTTGCTGATCAAATATTGAATTTGAGTCGTTCTGAAGAAAAAGTGAAGTGATGTGTAGCCAactatggtgacccatactcggaatttgtgctctgcatttaacccattcaagtgcacacacacagtagtgaacacacacacacaccgtgaacacacacacccagagcagtgggcagctgCGGCACCTGGGGAGCAgatgggggttcggtgccttgctcaagggtctcaccatAAAGAAATGAGTAACAACAGTTTGACACAAAGTGAAACTTTATTGATTTCCATTTTTTGGCATGGTACTAGTGAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25866 lncRNA downstream 63852 4699824 ~ 4700057 (-) True G21693
XR_003404663.2 lncRNA downstream 194237 4550571 ~ 4569672 (-) True LOC113545826
TU25760 lncRNA downstream 217200 4540227 ~ 4546709 (-) False G21592
TU25761 lncRNA downstream 217200 4540227 ~ 4546709 (-) True G21592
TU25724 lncRNA downstream 301893 4460931 ~ 4462016 (-) True G21557
XR_003404675.2 lncRNA upstream 9750 4775288 ~ 4777331 (-) True LOC113545964
TU25936 lncRNA upstream 19295 4784833 ~ 4785735 (-) True G21751
TU26005 lncRNA upstream 61012 4826550 ~ 4826923 (-) True G21810
TU26010 lncRNA upstream 131400 4896938 ~ 4897615 (-) True G21815
XR_004577182.1 lncRNA upstream 174160 4939698 ~ 4942727 (-) True LOC117596013
XM_026945422.2 mRNA downstream 44282 4717410 ~ 4719627 (-) True inha
XM_026945449.2 mRNA downstream 145442 4590384 ~ 4618467 (-) True igfbp2a
XM_026945646.2 mRNA downstream 279995 4475852 ~ 4483914 (-) True LOC113545959
XM_026945430.2 mRNA downstream 398738 4359120 ~ 4365171 (-) True prelid3b
XM_034310026.1 mRNA downstream 398781 4359120 ~ 4365128 (-) False prelid3b
XM_026945530.2 mRNA upstream 48192 4813730 ~ 4902011 (-) False obsl1a
XM_026945531.2 mRNA upstream 48192 4813730 ~ 4901992 (-) True obsl1a
XM_026945532.2 mRNA upstream 48192 4813730 ~ 4883412 (-) False obsl1a
XM_026945533.2 mRNA upstream 74289 4839827 ~ 4902011 (-) False obsl1a
XM_026920302.2 mRNA upstream 401323 5166861 ~ 5201211 (-) False LOC113530384
XR_004577458.1 other downstream 305462 4458336 ~ 4458447 (-) True LOC117596286
XR_004577457.1 other downstream 316430 4447367 ~ 4447479 (-) True LOC117596284
trnaf-gaa_14 other downstream 431738 4332099 ~ 4332171 (-) True trnaf-gaa_14
TU25557 other downstream 506822 4256668 ~ 4257087 (-) True G21434
XR_004579840.1 other downstream 985921 3750018 ~ 3777988 (-) True rab22a
XR_003404665.2 other upstream 47737 4813275 ~ 4902011 (-) False obsl1a
XR_003404666.2 other upstream 55799 4821337 ~ 4902011 (-) False obsl1a
XR_004579842.1 other upstream 55820 4821358 ~ 4902011 (-) False obsl1a
XR_003404667.2 other upstream 55841 4821379 ~ 4902011 (-) False obsl1a
XR_003403147.2 other upstream 345924 5111462 ~ 5201212 (-) False LOC113530384

Expression Profile