trnad-guc_7


Basic Information

Item Value
gene id trnad-guc_7
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047609.1
NCBI id CM018555.1
chromosome length 25638904
location 6991166 ~ 6991237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnad-guc_7
TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnad-guc_7 True 72 tRNA 0.61 1 6991166 6991237

Neighbor

gene id symbol gene type direction distance location
trnav-uac_8 NA coding downstream 23893 6967201 ~ 6967273 (-)
trnas-uga_5 NA coding downstream 26068 6965017 ~ 6965098 (-)
rap1gap2b LOC108279291,LOC108427996 coding downstream 28564 6920806 ~ 6962602 (-)
ncbp3 ncbp3,LOC102780188 coding downstream 75640 6905725 ~ 6915526 (-)
pgap2 pgap2 coding downstream 86695 6894987 ~ 6904471 (-)
zgc:152891 LOC108279314 coding upstream 5354 6996591 ~ 7008704 (-)
trnae-cuc_31 NA coding upstream 16654 7007891 ~ 7007962 (-)
trnae-cuc_32 NA coding upstream 18312 7009549 ~ 7009620 (-)
tpst1l tpst1,LOC107590047,LOC107667440,LOC107673841,LOC107710537 coding upstream 19417 7010654 ~ 7018073 (-)
crcp crcp,LOC107667441,LOC107673842 coding upstream 30867 7022104 ~ 7029098 (-)
G236662 NA non-coding downstream 129631 6860556 ~ 6861535 (-)
G236618 NA non-coding downstream 287297 6701753 ~ 6703869 (-)
LOC117599122 NA non-coding downstream 297043 6684553 ~ 6694123 (-)
G236611 NA non-coding downstream 300755 6689658 ~ 6690411 (-)
G236607 NA non-coding downstream 317182 6664073 ~ 6673984 (-)
G236931 sdf2,LOC107699983,LOC107715296,LOC107580890 non-coding upstream 106068 7097305 ~ 7177021 (-)
LOC117599194 NA non-coding upstream 290279 7281516 ~ 7283241 (-)
LOC117599190 NA non-coding upstream 309658 7300895 ~ 7301361 (-)
G236991 NA non-coding upstream 495542 7486779 ~ 7487988 (-)
LOC117599126 NA non-coding upstream 588112 7579349 ~ 7584768 (-)
si:dkey-22f5.9 LOC108279226 other downstream 232199 6757348 ~ 6758967 (-)
G236574 nhp2,nola2,LOC107590037,LOC107733502,LOC107673822 other downstream 362289 6624855 ~ 6628877 (-)
G235615 NA other downstream 1483721 5503472 ~ 5507445 (-)
mark2a LOC108278749 other downstream 1574551 5375709 ~ 5416615 (-)
slc8a4a slc8a4a,LOC108278532,LOC108428058,LOC107568312,LOC107669368,LOC107715375,LOC107700014 other downstream 1644910 5258691 ~ 5346256 (-)
tmem45b tmem45b other upstream 627365 7618602 ~ 7624797 (-)
si:dkey-183i3.6 NA other upstream 648424 7639661 ~ 7648833 (-)
anapc13 anapc13,anc13,LOC108278927,LOC107756075 other upstream 1098317 8089554 ~ 8097026 (-)
cadm1a LOC108427950,LOC108279108,LOC107756106 other upstream 1157279 8148516 ~ 8446883 (-)
G238000 NA other upstream 2220649 9211886 ~ 9215316 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_020738 NA non-coding NC_007133.7 CM002906.2 2889663 ~ 2892546 (-)
grasscarp (Ctenopharyngodon idella) G378454 NA non-coding CI01000186 null 112664 ~ 112887 (-)
rainbow trout (Oncorhynchus mykiss) trnad-guc-396 NA coding NW_023494072.1 JAAXML020000604.1 65221 ~ 65292 (-)
eurasian perch (Perca fluviatilis) trnad-guc_29 NA non-coding NC_053135.1 CM020932.1 4202634 ~ 4202705 (-)
striped catfish (Pangasianodon hypophthalmus) trnad-guc_15 NA misc NC_047613.1 CM018559.1 3988752 ~ 3988823 (-)
tiger barb (Puntius tetrazona) trnac-gca_87 NA coding NC_056709.1 CM032078.1 1145027 ~ 1145098 (-)
tiger barb (Puntius tetrazona) trnad-guc_20 NA coding NC_056723.1 CM032092.1 8475573 ~ 8475644 (+)
mexican tetra (Astyanax mexicanus) trnad-guc_15 NA non-coding NC_035910.1 CM008313.1 6132997 ~ 6133068 (+)