XLOC_020738


Basic Information

Item Value
gene id XLOC_020738
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2889663 ~ 2892546 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042296
ATTTATTCTAAGTCAACGCAGcctatgtttttgtatttttcttgttAAAACTGGTTTGTATTTTTGGCTTGAGTTGATACtcatttaaattcagcccacCAGATCAAGTTTCCAACACAATCTAGTTTTCATATCTAATGTATTCTCTTTCTAAAATGCGTTAGTGTGTGGTTTTCTGGGACAAGCAAGTGAAGCTACGTTTGCATAATAGAACAAATCTCAAGTTCTGATCACAACCCAGAACTTTAGATGTAAAGCTTGGACTGTTTATcaaaaaaccttttattttacaaattaatcaTGGTTTAGCATTAAAGGGCAGTAAAGTATAACATTTGTTAACCTTTGAGTGTGAGGCGCCCCCTAGTGGTTAACTCATGCCCAACAACTCTGTTTCAACAACGGTCATCTACAAAAATGGATTTTAGCAACTTTAACAGCTGTTTTAGGTCAGGAACTCCAATGGTCAAGGTCAGTAGACACATTATGCTGTATTAGTTGTTTTTTCATACATTGCATTTTTATACATATGCATTTTATgaatgtcattcattcatgtcTTTTTCTCTACGAAGGCCAAACATCCTGATTAAATATTGAGAGCACTGCTAGAGGTGAGTACTTTTTTCAGTTATATTTTTGTAATAGTCTAATATTGAGTTTAATATTGATTATTGCATGACGAGTGCCATCTGTGTTTTACACTAACGATAAAACTTTTTGTTGAAACCAAGTTATCATGtgagcattggtggttcagtggtagaattctcgcctgccacgcgggaggcccgggttcgattcccggccaatgcatcAGCTTATTTTAGATTTCTTTTACCTGGTTAAACACACATTTGTGAAATTTAGTTATTTACAGggtttaaaatttacattttagaccCTCAGACATCTCAATGCTCACATGTACCGTACAGTTGAACCAATTATTTAAGTGTATAAATAAACCTGTTTCAGCTTCATTTTATgagtagtttaaaaatattactgTCAGCCTTTTTTTGCTCATTAACAGCAATGAACAACATGCGCTCATATCAGTATTACTGGTTTGAACTAATTATTTTGCAAGTCAGGtaagtacattttaattaaaaaaaaggcaGACGTTTAActtaaattcagttttatttttagataCTTTGCGTCTGTTAAGCTATTTAAGTTTAGCAACCTaattaaatgtgttaattaattaacagtttttttatattatctaattaaattttgtttaaaacattatttttgtcatgtttttatctaaaaaaaataagttattaaaaaaaagtatttttagataGATCTGATCATAGaattccatttttttttgtctagattGCGTTAAGTAAGCTACGTACCGTTTAAAGTTCTCGCATTAGGCCCACTTCcatttgtagaaaaaaaatgtattgccaTAAATCTTTGTATTGTcttgttaaaactagtctagtaTTGAGTTGATTTTGACTGGTCAACACAGAATGTGTgtactatggtataaataaaaTTTCCTGTGCTAGAGGGATGGACATGtgagcattggtggttcagtggtagaattctcgcctgccacgcgggaggcccgggttcgattcccggccaatgcaacaGCTTTTTTTCTTAACACTTCTCTTGTTTAACGCAATTTTTTCAAATCTAGTTATTCACAGGGTCAGAAAATTTAATTTTAGACCCTCAGACATCCCAATGCTCACATGTTTTTAATTTTCAGTTGAACCAATTATATAAGTGTATAAATAAACCTTCTTTTGAGTCGATGTGATTTTATTAAACGTTACAAAATATTACTGTTAGCCTTTTTTGTTGGTTAAGGACTTTTTCCAGCAAACAAAAATTACATGCACTAATAATAGTTATTACTGGgtcaaattaattattattttattcttgaattattaataatgattgaTTCATAGTCAGGCAGCCACACATTTACACGtcaattgtatatataaaaaaacacagattagtttctgttttagttttaatttaaaatactttgcaTCTGTCAAGATATTCAAACTTAGCagctttattaaatttattattaacatttttctttctttagttcaTCCTAAGACTTTAAAGTTACTACCACTAAAgctctttgtctgtctgtctagcaaACCCTAGTTCGGGCATGTTAGCAAAATGCTAATATGCTAGCAGCATGTGAAATCTTGCTAGCAACGTGCTAAGACATTCAAACTTTCCTTAAAATCCCAATTCCAGTTCCTTCCCTTGAATGCATGAACAAATTTGATGTCCAAAAAGAAATATTTGTTCACATTGTGTATATTAATTCAAGCTGGTGCGAATTTCTCTGCTTGTTTATTTCAGACCCTGCCTACCGATAAAGTCTTTGTGCGCCGTACTACAATGTTAAGGTAAGATGTGTTGTTACTACAACACTGCAGACCCATTTTCCTCTTTCTTTAATTGTAGAAACCATTTTAAACAAGTAATGATTAACAACAGACAGAGACATCGCTCCAGGCGTAGGAACAAAAGGACGTGTTTGCTTTTCTACAATCactcctcgttagtatagtggtaAGTATCCCCGCCTGTCACGCGggagaccggggttcgattccccgACGGGGAGTATACACTTTTTCTCCTTAAATATTTACAGCAAAACTGGCTTAATTACTTATTTAAGAGTGCTGAAgagtcaataaaaatatttttataattatttttgtgtttaacattgaCAAAACAAATATTAGTAGGTCACTTCTCAAATTACATTCAGCTTATCAGCTTATAGCATCATAAGACAAAAccctaaaacacatttatttgagATATTGACAGataaacagttgaagttaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042296 True 2884 lncRNA 0.33 1 2889663 2892546

Neighbor

gene id symbol gene type direction distance location
XLOC_020737 aqp12 coding downstream 2726 2874838 ~ 2886937 (-)
XLOC_020736 NA coding downstream 61577 2814463 ~ 2828086 (-)
XLOC_020734 NA coding downstream 63962 2795028 ~ 2825701 (-)
XLOC_020735 NA coding downstream 82636 2799465 ~ 2807027 (-)
XLOC_020733 NA coding downstream 100125 2769742 ~ 2789538 (-)
XLOC_020739 pak2b coding upstream 2965 2895511 ~ 2929156 (-)
XLOC_020740 pigx coding upstream 38794 2931340 ~ 2937529 (-)
XLOC_020741 ing5a coding upstream 56565 2949111 ~ 3092136 (-)
XLOC_020742 lmnb2 coding upstream 228540 3121086 ~ 3152357 (-)
XLOC_020743 lonp1 coding upstream 267901 3160447 ~ 3182965 (-)
XLOC_020732 NA non-coding downstream 105779 2762090 ~ 2783884 (-)
XLOC_020747 NA non-coding upstream 454967 3347513 ~ 3347884 (-)
XLOC_020749 NA non-coding upstream 848040 3740586 ~ 3741284 (-)
XLOC_020750 NA non-coding upstream 991061 3883607 ~ 3886684 (-)
XLOC_020752 CU074310.1 non-coding upstream 1419257 4311803 ~ 4313118 (-)
XLOC_020756 NA non-coding upstream 1840461 4733007 ~ 4735337 (-)
XLOC_020731 NA coding downstream 98173 2702802 ~ 2791490 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G378454 NA non-coding CI01000186 null 112664 ~ 112887 (-)
rainbow trout (Oncorhynchus mykiss) trnag-gcc-20 NA coding NC_050570.1 CM025857.1 20699809 ~ 20699879 (+)
eurasian perch (Perca fluviatilis) trnag-gcc_27 NA coding NC_053135.1 CM020932.1 13112158 ~ 13112228 (-)
striped catfish (Pangasianodon hypophthalmus) trnad-guc_15 NA misc NC_047613.1 CM018559.1 3988752 ~ 3988823 (-)
striped catfish (Pangasianodon hypophthalmus) trnad-guc_7 NA coding NC_047609.1 CM018555.1 6991166 ~ 6991237 (-)
tiger barb (Puntius tetrazona) trnac-gca_96 NA coding NC_056709.1 CM032078.1 1153955 ~ 1154025 (-)
tiger barb (Puntius tetrazona) trnad-guc_20 NA coding NC_056723.1 CM032092.1 8475573 ~ 8475644 (+)
mexican tetra (Astyanax mexicanus) trnad-guc_7 NA misc NC_035899.1 CM008302.1 65093078 ~ 65093149 (-)
mexican tetra (Astyanax mexicanus) trnad-guc_15 NA non-coding NC_035910.1 CM008313.1 6132997 ~ 6133068 (+)