XLOC_020740 (pigx)


Basic Information

Item Value
gene id XLOC_020740
gene name pigx
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 2931340 ~ 2937529 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00040906
GGAGTTGGGATTAGAGCATGAGCGCGGATCAATGatggtttatttatatttattagcaacggtgttgtgttttattcatcATGGAAATGCGCAAGAAGCAGATGATTGTTTTCCCACTGAATGGCTGAAGTCTCTGGTCATTTCTGTGAACATTTCCAAAGCTGGATTTcacagAGATCTGGAGTACAGTGTTTACTGGAGTGAAACAGATCATGACGTGAAAGCTTTACTAGTGCAGAAGATGCCGAGTGGAGtttacatggatgaatatcaGCTGGAGACTCTGAGACATGACACAGGCttggagGTTCTCCTGGACTCAAAGGTGGATCTGGAAGCTCCGGAGTATTTGTCGTCTGGTTTCACGGCGCTGGTTTTTCTCTCTGGTAATGCGGTGACTGTTCCGGTTCACGGCCGCTATCACAGACCCTCAGACACACACAGCCATGTGACGGTGGACATCCAGCCGCCCAGACTCCTGCTGAGATCAGACCAGTGTACGTCAATCCTCATATCAACAGATTCAGAAGGTGAGACTCCCAATGCTCAACATACAGTGGTTGAAGCTCCATGTACATTCAGAAACGAGAGCTTCTGCTTATGGCTGGAGATACAGGACCTGAAGGGAAGCGCTGGAGTGAGTCTGGAGCTTCCGGTGGGAGATTCTTCAAAGAcgacgtgtgtgtgtgtcgtgacTTTACTGACCACCACACTGTGCTGCGTTTACCTCCTCATTGTTATCTGGAGACACGGCACTTTCTGACCAATCACACGACAGCAAGAGCCAAAACAACGTTAAAATACTGGATTAATGATAAGTTATTAGTGCAGATTGTGTGAGAGGGAATAAAACGGATTGtgactttcttttttaaa
>TCONS_00040907
GTCATCGGACACGGAAGTAAACACTTGGAGTTGGGATTAGAGCATGAGCGCGGATCAATGatggtttatttatatttattagcaacggtgttgtgttttattcatcATGGAAATGCGCAAGAAGCAGATGATTGTTTTCCCACTGAATGGCTGAAGTCTCTGGTCATTTCTGTGAACATTTCCAAAGCTGGATTTcacagAGATCTGGAGTACAGTGTTTACTGGAGTGAAACAGATCATGACGTGAAAGCTTTACTAGTGCAGAAGATGCCGAGTGGAGtttacatggatgaatatcaGCTGGAGACTCTGAGACATGACACAGGCttggagGTTCTCCTGGACTCAAAGGTGGATCTGGAAGCTCCGGAGTATTTGTCGTCTGGTTTCACGGCGCTGGTTTTTCTCTCTGGTAATGCGGTGACTGTTCCGGTTCACGGCCGCTATCACAGACCCTCAGACACACACAGCCATGTGACGGTGGACATCCAGCCGCCCAGACTCCTGCTGAGATCAGACCAGTGTGAGACTCCCAATGCTCAACATACAGTGGTTGAAGCTCCATGTACATTCAGAAACGAGAGCTTCTGCTTATGGCTGGAGATACAGGACCTGAAGGGAAGCGCTGGAGTGAGTCTGGAGCTTCCGGTGGGAGATTCTTCAAAGAcgacgtgtgtgtgtgtcgtgacTTTACTGACCACCACACTGTGCTGCGTTTACCTCCTCATTGTTATCTGGAGACACGGCACTTTCTGACCAATCACACGACAGCAAGAGCCAAAACAACGTTAAAATACTGGATTAATGATAAGTTATTAGTGCAGATTGTGTGAGAGGGAATAAAACGGATTGtgactttcttttttaaa

Function

symbol description
pigx Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X).

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis

ZFIN:

id description
ZDB-GENE-070705-212 Predicted to act upstream of or within GPI anchor biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Orthologous to human PIGX (phosphatidylinositol glycan anchor biosynthesis class X).

Ensembl:

ensembl_id ENSDARG00000063559

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00040906 False 876 mRNA 0.46 6 2931340 2937503
TCONS_00040907 True 869 mRNA 0.46 6 2931340 2937529

Neighbor

gene id symbol gene type direction distance location
XLOC_020739 pak2b coding downstream 2184 2895511 ~ 2929156 (-)
XLOC_020738 NA coding downstream 38794 2889663 ~ 2892546 (-)
XLOC_020737 aqp12 coding downstream 44403 2874838 ~ 2886937 (-)
XLOC_020736 NA coding downstream 103254 2814463 ~ 2828086 (-)
XLOC_020734 NA coding downstream 105639 2795028 ~ 2825701 (-)
XLOC_020741 ing5a coding upstream 11582 2949111 ~ 3092136 (-)
XLOC_020742 lmnb2 coding upstream 183557 3121086 ~ 3152357 (-)
XLOC_020743 lonp1 coding upstream 222918 3160447 ~ 3182965 (-)
XLOC_020744 gpr35.1 coding upstream 315407 3252936 ~ 3261879 (-)
XLOC_020745 si:zfos-943e10.1 coding upstream 324884 3262413 ~ 3299355 (-)
XLOC_020735 NA non-coding downstream 124313 2799465 ~ 2807027 (-)
XLOC_020733 NA non-coding downstream 141802 2769742 ~ 2789538 (-)
XLOC_020747 NA non-coding upstream 409984 3347513 ~ 3347884 (-)
XLOC_020749 NA non-coding upstream 803057 3740586 ~ 3741284 (-)
XLOC_020750 NA non-coding upstream 946078 3883607 ~ 3886684 (-)
XLOC_020752 CU074310.1 non-coding upstream 1374274 4311803 ~ 4313118 (-)
XLOC_020756 NA non-coding upstream 1795478 4733007 ~ 4735337 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000186_00098106_00099994 NA coding CI01000186 null 97176 ~ 100163 (+)