G255780


Basic Information

Item Value
gene id G255780
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15881386 ~ 15881865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU302766
atatgatcggttatgattggatgtgataggttcgTTCGATAAATCCTGCCTCTTGTTTTCGTGCGAGCTCTCGGCctgaatggacaaaatgatggcgttactgactaattataaagtaagtaaacaacTCACCCGCTTAGATATCACTGCTTTGTGTCacgtcaaaaatgaaaacttgaaatgGCCTGAAAACGTGATGACTTAGTTTTTAGTGAGCATTcagcttgatgaaatgaaagatataTCTTcgtgactgtgtttgtgtttacagagcttTTATGACGATGACCCGAAAATAAGTtgactattaaaaaaacagctgaacatcagttcacaaataaaaaaatattagtaacactttacaataaggtgtcatttgttaacattagttaatgtgttaactaacatgaacaaacaacgaacatttattacagtacttattaatctttgttaacgttagttaataaaaatacagctgtt

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU302766 True 480 lncRNA 0.33 1 15881386 15881865

Neighbor

gene id symbol gene type direction distance location
LOC113530581 NA coding upstream 340656 15519342 ~ 15540730 (+)
naa10 naa10,LOC107705681,LOC107693544,LOC107723122,LOC107696956 coding upstream 475739 15399806 ~ 15405647 (+)
ddx23 ddx23 coding upstream 490223 15364156 ~ 15391163 (+)
soga1 soga1 coding upstream 828995 15008121 ~ 15052391 (+)
lama5 lama5 coding upstream 908395 14899630 ~ 14972991 (+)
prpf6 prpf6,LOC107705744,LOC107673318,LOC107697009 coding downstream 13778 15895643 ~ 15943003 (+)
edem2 edem2,LOC107697010 coding downstream 95031 15976896 ~ 16034838 (+)
baz2a baz2a coding downstream 177447 16059312 ~ 16173060 (+)
plpbp prosc,LOC107715029,LOC107671833,LOC107598604,LOC107697965,LOC107707038,LOC107593998 coding downstream 707525 16589390 ~ 16620443 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding downstream 913435 16795300 ~ 16823847 (+)
LOC113530859 NA non-coding upstream 55934 15823288 ~ 15825452 (+)
G255650 NA non-coding upstream 223244 15657777 ~ 15658142 (+)
G255649 NA non-coding upstream 223759 15652846 ~ 15657627 (+)
G255645 uckl1 non-coding upstream 258166 15611925 ~ 15623220 (+)
G255507 NA non-coding upstream 426069 15454955 ~ 15455317 (+)
G255798 NA non-coding downstream 67348 15949213 ~ 15949589 (+)
G255809 NA non-coding downstream 161290 16043155 ~ 16048021 (+)
LOC117599274 NA non-coding downstream 166697 16048562 ~ 16052382 (+)
G255815 NA non-coding downstream 296272 16178137 ~ 16181020 (+)
G256044 NA non-coding downstream 623197 16505062 ~ 16505504 (+)
rps21 rps21,LOC107666483 other upstream 713718 15117070 ~ 15167668 (+)
G254991 krt18,LOC107681396,LOC107727028,LOC107666358,LOC107551541 other upstream 1207434 14622317 ~ 14673952 (+)
wfdc2 wfdc3,LOC108276102,LOC105013800 other upstream 1809170 14070228 ~ 14072216 (+)
kif3b kif3b,LOC107690851,LOC107558233,LOC107559485 other upstream 2911377 12956130 ~ 12970009 (+)
rbbp8l rbbp8nl other upstream 3027006 12837051 ~ 12854380 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other downstream 328225 16210090 ~ 16229406 (+)
spo11 spo11 other downstream 350148 16232013 ~ 16326614 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other downstream 481681 16363546 ~ 16396245 (+)
G256046 NA other downstream 626160 16508025 ~ 16508380 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 1189271 17071136 ~ 17124951 (+)

Expression


Co-expression Network