RNA id: TU302766


Basic Information

Item Value
RNA id TU302766
length 480
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G255780
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 15881386 ~ 15881865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atatgatcggttatgattggatgtgataggttcgTTCGATAAATCCTGCCTCTTGTTTTCGTGCGAGCTCTCGGCctgaatggacaaaatgatggcgttactgactaattataaagtaagtaaacaacTCACCCGCTTAGATATCACTGCTTTGTGTCacgtcaaaaatgaaaacttgaaatgGCCTGAAAACGTGATGACTTAGTTTTTAGTGAGCATTcagcttgatgaaatgaaagatataTCTTcgtgactgtgtttgtgtttacagagcttTTATGACGATGACCCGAAAATAAGTtgactattaaaaaaacagctgaacatcagttcacaaataaaaaaatattagtaacactttacaataaggtgtcatttgttaacattagttaatgtgttaactaacatgaacaaacaacgaacatttattacagtacttattaatctttgttaacgttagttaataaaaatacagctgtt

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403187.2 lncRNA upstream 55934 15823289 ~ 15825452 (+) True LOC113530859
TU302647 lncRNA upstream 56002 15823288 ~ 15825384 (+) False LOC113530859
TU302599 lncRNA upstream 223244 15657777 ~ 15658142 (+) True G255650
TU302598 lncRNA upstream 223759 15652846 ~ 15657627 (+) True G255649
TU302592 lncRNA upstream 258166 15611925 ~ 15623220 (+) True G255645
TU302785 lncRNA downstream 67348 15949213 ~ 15949589 (+) True G255798
TU302796 lncRNA downstream 161290 16043155 ~ 16048021 (+) True G255809
TU302797 lncRNA downstream 166697 16048562 ~ 16052355 (+) True LOC117599274
XR_004579732.1 lncRNA downstream 167357 16049222 ~ 16052382 (+) False LOC117599274
TU302802 lncRNA downstream 296272 16178137 ~ 16181020 (+) True G255815
XM_026920719.1 mRNA upstream 340656 15519342 ~ 15540730 (+) True LOC113530581
XM_026920177.2 mRNA upstream 475739 15399806 ~ 15405647 (+) False naa10
XM_026921436.2 mRNA downstream 13778 15895643 ~ 15943003 (+) True prpf6
XM_026920739.2 mRNA downstream 95031 15976896 ~ 16034836 (+) True edem2
XM_034311949.1 mRNA downstream 95111 15976976 ~ 16034836 (+) False edem2
XM_034311950.1 mRNA downstream 118099 15999964 ~ 16034838 (+) False edem2
XM_034311955.1 mRNA downstream 177447 16059312 ~ 16173060 (+) True baz2a
TU302132 other upstream 713718 15117112 ~ 15167668 (+) False rps21
TU302131 other upstream 761174 15117112 ~ 15120212 (+) True rps21
TU301848 other upstream 1207434 14669804 ~ 14673952 (+) False G254991
TU301849 other upstream 1207434 14669804 ~ 14673952 (+) False G254991
TU301463 other upstream 1809170 14070269 ~ 14072216 (+) False wfdc2
XR_004579698.1 other downstream 328785 16210650 ~ 16229406 (+) False LOC113530889
XR_003403143.2 other downstream 481684 16363549 ~ 16395000 (+) False LOC113530371
TU302910 other downstream 491377 16373242 ~ 16396212 (+) False LOC113530371
TU303060 other downstream 626160 16508025 ~ 16508380 (+) True G256046
XR_004579712.1 other downstream 1189271 17071136 ~ 17120941 (+) False itga5

Expression Profile