LOC113530783


Basic Information

Item Value
gene id LOC113530783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17048077 ~ 17050931 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303360
TATGAAAGGCTGTTGTTTGGAAATGAGTGCATGTGAAATAAAGGTTTTCTTATAGTTTCCACAAAAGGAATGCTATTTAACCGTTTGTACATCCTAGCTAAATGTCTGATGAAAATGCTGACCTTTACTTAGGTCAATCCACATCTTGTATCTACCTCAAAATGTTAGTTTGATGCCCACTGCATCACC
>XR_003403182.2
TCTGCTTTCTTGgtcatgattgtgtgtgtgtgtgtgtgtgtgtgtgttttttctggtACACCACCAGAAAAATCAAGACACGGGAGCCTGTGTTTGTTCTCAGCTGCGATTATCCTGTTTTAAATTGGCTGTGGTCCCTTTAAATGTATTTCACTGGATTGACCTTCAGAGTGCGCCATTCACGAGCACCAAACACAACGCTACCGTGAGAGGATTAGCGACTCGCGTGACATTGAAGAACCATTAGGAGCTAAACTTTAGTCCATTAAGTTTATTTAGTGGTTGGTGGCGCATGCCTGCTGGGTCAATCACACAGTCGGCACTTGAAGACCTCATGTTTGAGAACAGTCTGTGTCCACCCACTTGCAATACTTATTATAGAGAATGTAGACACCACAGTAAAGTccatttaattcattatttcatatttgccTGTAATTCATGCATAAGGATGCTCTGTTGTGACAAATGTGACAAAATGCCCGCATTATCTAttggtaaaacaaaaaaaatataaggcCATTCTTCATCCAATACCAATATGAAAGGCTGTTGTTTGGAAATGAGTGCATGTGAAATAAAGGTTTTCTTATAGTTTCCACAAAAGGAATGCTATTTAACCGTTTGTACATCCTAGCTAAATGTCTGATGAAAATGCTGACCTTTACTTAGGTCAATCCACATCTTGTATCTACCTCAAAATGTTAGTTTGATGCCCACTGCATCACCAGTCCAATCTCacagttattttaaatagattaaaatccCTAACATCAGCTGTGTTCTCCTACAGAATCATTTTTTTCGCAGACAGAGTGCATCATGACCCAAATGTTCCTGCACAGAACACAGGGactgattattttttgtaaagtaGTTGTATGTAAAGGTAACATGGTTATCATTCTTctatttaacagattattaggctgcatgtaaatgtaacagAATAGAGTAATCCAAGTATGGCCAATCTAAATgaaattttcatttgtttgaaaattttttgataatttgcataatatgcaaaacctactttagTCCTGGGATTTTTGGCATATCTTCACACATATGGTGTCAAATTACTCAGCAAAGTGTGAGCCTCaatactttatattatttatacaatacTTTAAATTATcttgacattttaaacaatatggccacaaTACATCAATCAATATTAAGGAGGCGGAGCTGGATTACTCAAATAGTTGTAATTCATAATTGGTAATATGGATTTGAACCAAACTTGAAGGTACAATACAGTTCAGTACAAGGATCTGAGGACGTCTGCAAAGATTGGGGTGTGGTCATTGATAGGGGGCAGAGTTAAGTCCTAATAgatgtttctcaggaaccaaaagtccagttgatggatggatttttaatcatcactgaaatattcaaaaaataTGACCagtttcagccaatcagctttcaatgggcattttaaacaaatagcattgagctatcatcacaaaacttgataagtataTTTATGTATGGTGTCTTTTATGGTTCTGTGTttcttggcaagaactggcaaCTGGGGGCACTACGAGTATTATGAGTAGCGTCTGGACCCCACAGGTCGCCGCTTGCAGCtagattcttcttcttctgattctCCACCAAAACAAATTGTGTTGACCAAACCATAAGTCATAGAGATGTGAAACTTGGTGAAGAGGTATTGCTCCTTCCTGCTACTCAGGCAAGCATGATCAGCCTTATGGTGGTGCTGTAGCACAGAGTTTTACATTATGAGGCctaaaaacaaaattcttttttcttttgattcCTTGGGGTTTTGCAGAAACTGCAATTTAaggtaatttgcataatgaAACTTGAAAGTCATATACAGGATAAGAGTCTGAGCTCATAAATAAAGTTGGGGGTATAATCATACATAGCAGGTGgagctaaggtcagataactgtttctcaggaaccttAAGTCTGAGTGGAAATTTAGAATAGTTCATCTATGTATTATTTTGATAATGATCTTATTAgttaaaaacatggccaccatcgGCTAATCAGGGTTAAGCATGAATATAACAGGGTTAACATTGAGCTATttgtcacaaaacttgaaaGGTGGGTTCCTGCTGGGACCCACTTGTAAATGAAGCATTTTGGCCATTGGGGGTGCTATTCATGTTTTTGCAAATTAAAAGAAGTATATCTCTTGTAAAATAAGGTGTACCATAAATCTTCTTCATTATGTTGATTCTGTGGCTGAAATGAGTCAAATTTGCTTTTTTGGACCACATGTGATGATTCTcccctgtgtcttattaccaccAGTCTACTTACATgtgtctttgtgctttcagtaacTGCCATAACCAGAGAGAGCAGCATAGCAGGCGGAGTGTGCAagacacacgcaaacacacacaaggagcATGAACTTGGATTCTGAACTTGAATAGGGTGAAAGCCACAAGCTAGTCATAACCCCTTTCTGTTGGCTTGTCATTTTTGGTTGAGTTCatgaaagtgtgctgaaaagcgCAGTGAAAATAAACGCAAGCGCAGAGCTCTGCTGAAATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303360 False 189 lncRNA 0.37 1 17048904 17049092
XR_003403182.2 True 2568 lncRNA 0.38 2 17048077 17050931

Neighbor

gene id symbol gene type direction distance location
csrnp2 csrnp2 coding upstream 13801 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 87511 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 134005 16872863 ~ 16914072 (+)
bin2a bin2 coding upstream 201092 16830566 ~ 16846985 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding upstream 224230 16795300 ~ 16823847 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding downstream 121261 17172192 ~ 17175513 (+)
hrct1 LOC108276455 coding downstream 138948 17189879 ~ 17194246 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 376371 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 598383 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 688340 17739271 ~ 17746529 (+)
G256239 NA non-coding upstream 124674 16922911 ~ 16923403 (+)
G256119 NA non-coding upstream 171041 16876802 ~ 16877036 (+)
G256114 NA non-coding upstream 196897 16847154 ~ 16851180 (+)
G256097 NA non-coding upstream 285531 16756532 ~ 16762546 (+)
G256077 NA non-coding upstream 318911 16661652 ~ 16729166 (+)
G256319 NA non-coding downstream 3935 17054866 ~ 17055091 (+)
G256322 NA non-coding downstream 7261 17058192 ~ 17058497 (+)
G256331 NA non-coding downstream 55786 17106717 ~ 17108738 (+)
G256405 NA non-coding downstream 146748 17197679 ~ 17197916 (+)
G256408 NA non-coding downstream 189957 17240888 ~ 17241933 (+)
G256046 NA other upstream 539697 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 651832 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 721463 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 818671 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1880409 15117070 ~ 15167668 (+)
itga5 itga5,LOC107599342,LOC107723722 other downstream 20205 17071136 ~ 17124951 (+)
LOC113530386 slc26a9 other downstream 124770 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1828550 18879481 ~ 18934319 (+)
pkig NA other downstream 2147495 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2427371 19478302 ~ 19478895 (+)

Expression


Co-expression Network