G256331


Basic Information

Item Value
gene id G256331
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17106717 ~ 17108738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303379
GCCCTATTGTTTTCCTaaggattatttattattattattattatattttccaccatttggattttgtcaaaaactgttttttcgttactcctcctacaaattttgtccaatcatcaaaTTTGGCACGTCATCtccagagtaagcctcacaaaagttatcaaaagaattttgaatattccaaagGGTTTTCACGTAATTGGCCAACGAATCTGAAGgcaaagccgccaaacaggaatcGAGGcagtatctcagcaacgactctcagtgcactgacacaaaacttcgtatgcatcttcaggaccatgcccttaggctatgcaacaaattttgtgcCAGTGCCAtgtactggtcaaaagtaacaataacatgctaaaaaaaatgcttacatctaactgccatttttgctacttctcctccaaattttgtccaatcttcaccaaatttggctcacatcatcttgacacctgtctaaacaatgccaccctgctgcccatttgttcatctagaactttcctcctacagtcagagaattccaccactgtccgtggtcaaaacatacacgtCATGAGTGTAACtccaaatcactcttgaatccctttgcctaaagttatggctctgctttcctttgattgcttaggcaacaattctatcatgtctgtgaatgtgtggctcaccgagtctgggtgcttggcctccgaaaatgctggggctCTGTAGTGCCCCCTTTTGACAAAAGTGGTGGGGTCAGTTTTACCTACAGTTACCAAACTTGGTACATATGTTGTTTTCATCAAGCCGGACAACTTTCAAAGTGACAGTCATTAGCTCCGCCTAACAGGAAGTAGGTCATTTTGGCTTTAATGTGGATTTTCTACTATATAGCTAGGAGAAAGGGACATAAACAGCATTATGATGCACCCACTTAATGCATGTGCCCACTACACATTACTTAtctacaattaattaatggctaGTAAAGATAACAACATACATCTCAAACCTTTTCATGCATTATCTCACCAAATACTACGTGTATGTTTGGACATGGAAGCTGTTGTAAAGCCTTAGACATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303379 True 1074 lncRNA 0.40 2 17106717 17108738

Neighbor

gene id symbol gene type direction distance location
csrnp2 csrnp2 coding upstream 72441 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 146151 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 192645 16872863 ~ 16914072 (+)
bin2a bin2 coding upstream 259732 16830566 ~ 16846985 (+)
racgap1 racgap1,LOC107599350,LOC107594001,LOC107671897,LOC107697971,LOC107756422 coding upstream 282870 16795300 ~ 16823847 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding downstream 63454 17172192 ~ 17175513 (+)
hrct1 LOC108276455 coding downstream 81141 17189879 ~ 17194246 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 318564 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 540576 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 630533 17739271 ~ 17746529 (+)
G256322 NA non-coding upstream 48220 17058192 ~ 17058497 (+)
G256319 NA non-coding upstream 51626 17054866 ~ 17055091 (+)
LOC113530783 NA non-coding upstream 55786 17048077 ~ 17050931 (+)
G256239 NA non-coding upstream 183314 16922911 ~ 16923403 (+)
G256119 NA non-coding upstream 229681 16876802 ~ 16877036 (+)
G256405 NA non-coding downstream 88941 17197679 ~ 17197916 (+)
G256408 NA non-coding downstream 132150 17240888 ~ 17241933 (+)
G256425 NA non-coding downstream 157772 17266510 ~ 17266732 (+)
G256426 NA non-coding downstream 172582 17281320 ~ 17282500 (+)
G256448 NA non-coding downstream 219647 17328385 ~ 17328590 (+)
G256046 NA other upstream 598337 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 710472 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 780103 16232013 ~ 16326614 (+)
LOC113530889 LOC108275684,LOC108443123,LOC107705670 other upstream 877311 16210090 ~ 16229406 (+)
rps21 rps21,LOC107666483 other upstream 1939049 15117070 ~ 15167668 (+)
LOC113530386 slc26a9 other downstream 66963 17175701 ~ 17188377 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1770743 18879481 ~ 18934319 (+)
pkig NA other downstream 2089688 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2369564 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2516791 19625529 ~ 19705063 (+)

Expression


Co-expression Network