G256425


Basic Information

Item Value
gene id G256425
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17266510 ~ 17266732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303485
gtcgtggcctgtTGGTTAGAGCGtcagacttgtaacccgaaggttgtgggttcaagtctcaggtccggacagggattgtaggtggggggagtgaatgaccagcactctcttccaccctcaataccacaactgagtgtgtgcacttggatgggttaaatgcagagcacaaattccaagtatgggtcaccatacttggccacacgtcacttcactttcactGTAG

Function

GO: NA

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU303485 True 223 lncRNA 0.51 1 17266510 17266732

Neighbor

gene id symbol gene type direction distance location
hrct1 LOC108276455 coding upstream 72264 17189879 ~ 17194246 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 90997 17172192 ~ 17175513 (+)
csrnp2 csrnp2 coding upstream 232234 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 305944 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 352438 16872863 ~ 16914072 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 160570 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 382582 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 472539 17739271 ~ 17746529 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 926465 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 1080043 18346775 ~ 18351473 (+)
G256408 NA non-coding upstream 24577 17240888 ~ 17241933 (+)
G256405 NA non-coding upstream 68594 17197679 ~ 17197916 (+)
G256331 NA non-coding upstream 157772 17106717 ~ 17108738 (+)
G256322 NA non-coding upstream 208013 17058192 ~ 17058497 (+)
G256319 NA non-coding upstream 211419 17054866 ~ 17055091 (+)
G256426 NA non-coding downstream 14588 17281320 ~ 17282500 (+)
G256448 NA non-coding downstream 61653 17328385 ~ 17328590 (+)
G256459 NA non-coding downstream 137407 17404139 ~ 17404370 (+)
G256466 NA non-coding downstream 166834 17433566 ~ 17435773 (+)
G256475 NA non-coding downstream 400985 17667717 ~ 17670603 (+)
LOC113530386 slc26a9 other upstream 78133 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 141559 17071136 ~ 17124951 (+)
G256046 NA other upstream 758130 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 870265 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 939896 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1612749 18879481 ~ 18934319 (+)
pkig NA other downstream 1931694 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2211570 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2358797 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 3124077 20390809 ~ 20398714 (+)

Expression


Co-expression Network