G256459


Basic Information

Item Value
gene id G256459
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 17404139 ~ 17404370 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU303523
CTCCTGTTGTGTTCGTTTCGGCTAACACTCATAGTGTTCCCGGTCATTTTTGACCGGGATCATTTCATTCCATTATAAATCcacaataatacatatattatcACCTAATGTTGTATTAGATCTTTTTATCAACTTCAGCTCTTGGAGAACATTACAAGTTTTGAACTTGTATTTGCTGTGTATGTCCTGCAGGCCACATTTACCTGAGCTCATACCACTcgtttttttaggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU303523 True 232 lncRNA 0.38 1 17404139 17404370

Neighbor

gene id symbol gene type direction distance location
hrct1 LOC108276455 coding upstream 209893 17189879 ~ 17194246 (+)
slc48a1a slc48a1a,LOC108275665,LOC108425489,LOC103038309 coding upstream 228626 17172192 ~ 17175513 (+)
csrnp2 csrnp2 coding upstream 369863 17005065 ~ 17034276 (+)
tfcp2 tfcp2,LOC107671887,LOC107715039 coding upstream 443573 16936562 ~ 16960566 (+)
pou6f1 pou6f1 coding upstream 490067 16872863 ~ 16914072 (+)
plxna2 plxna2,LOC108425528,LOC107594012 coding downstream 22932 17427302 ~ 17627058 (+)
si:dkey-261h17.1 NA coding downstream 244944 17649314 ~ 17676304 (+)
si:ch211-66i15.4 NA coding downstream 334901 17739271 ~ 17746529 (+)
LOC113530861 tshz2,LOC107758790,LOC107664189,LOC107729067,LOC107697876 coding downstream 788827 18193197 ~ 18240912 (+)
pfdn4 pfdn4,LOC107697845,LOC107758785,LOC106572636 coding downstream 942405 18346775 ~ 18351473 (+)
G256448 NA non-coding upstream 75549 17328385 ~ 17328590 (+)
G256426 NA non-coding upstream 121639 17281320 ~ 17282500 (+)
G256425 NA non-coding upstream 137407 17266510 ~ 17266732 (+)
G256408 NA non-coding upstream 162206 17240888 ~ 17241933 (+)
G256405 NA non-coding upstream 206223 17197679 ~ 17197916 (+)
G256466 NA non-coding downstream 29196 17433566 ~ 17435773 (+)
G256475 NA non-coding downstream 263347 17667717 ~ 17670603 (+)
LOC117599208 NA non-coding downstream 298717 17703087 ~ 17729053 (+)
G256627 NA non-coding downstream 342784 17747154 ~ 17747710 (+)
G256660 NA non-coding downstream 386141 17790511 ~ 17790906 (+)
LOC113530386 slc26a9 other upstream 215762 17175701 ~ 17188377 (+)
itga5 itga5,LOC107599342,LOC107723722 other upstream 279188 17071136 ~ 17124951 (+)
G256046 NA other upstream 895759 16508025 ~ 16508380 (+)
LOC113530371 LOC108276302,LOC108443130,LOC107673205 other upstream 1007894 16363546 ~ 16396245 (+)
spo11 spo11 other upstream 1077525 16232013 ~ 16326614 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other downstream 1475111 18879481 ~ 18934319 (+)
pkig NA other downstream 1794056 19198426 ~ 19222559 (+)
G257622 LOC108276210 other downstream 2073932 19478302 ~ 19478895 (+)
si:ch73-206d17.1 LOC108275771 other downstream 2221159 19625529 ~ 19705063 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 2986439 20390809 ~ 20398714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1467308 NA non-coding NC_048581.1 CM023235.2 57641249 ~ 57641480 (+)