G258097 (hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970)


Basic Information

Item Value
gene id G258097
gene name hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20369995 ~ 20386813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305574
tgttgagagagagaaataacgGTAAGggcaagtgagagagagagagagagagagagagagagagagagagagagaagattgtAGCACTTCCAATAAGAGTGGGAGTCCCCATAACGTTGATTTAAATATTATCCAGGTGACCACAGTAAGTCAAGGTCATAAAATTGTAATGTCATGACGGTCCTGCAAAGCGCTGGGGGTGGATTTTATGATCTGCAAATATAATGTGCTGGTGCAGTAAAGATGCATTAAAAAGCGGAGTGGAGGAAGGCTAATCCACATACCCAGGCTTGCAATGTGCTGGCCTCACTGGCGCGCTCTGCGGGCTGTTATAGAGGCAGGAAGCCTGTTTAATGGCTCTGGAAAAACACAACGCTTACACACCAGGCAGTCGACATGGATGTACGATAagcatcaacaacaacaacaacagcagcaacaacaacaacaatcaatCAATACGTGGATCATATCATATACAGATAAACAGATTTCAAGAAAGGCCGAAAAGCTCCTGGGAGACGCAATGGGAGGCAGACATATAGTCGCTACCAGACTCTGGAGCTGGAGAAGGAGTTCCTCTTCAATCCGTACCTTACACGCAAGCGGCGGATTGAAGTGTCCCACGCGTTGAGCTTGACTGAACGGCAGGTGAAGATCTGGTTCCAAAACCGCCGAATGAAGTGGAAAAAGGAGAACAACAAAGACAAGTTTCCGGGTCAGAGAGGGGAGGCCGACGCCGAAGCCGACGAAGAGGGCAATGAGAACGGCGAGGCGGAAGAAACCGAAGACAAGGAAAcggaagagaaagaagaaagcaagGACTGATTTTATGGTCTTTTTATGGTTATATGGCGGACAGAAAGAGAAGACATTTCGGGGATAGCTGATGAAAGAGAAGACGCGCCAAACAGTTGGGtcaaaagtgagaaaaaaaatccacagacgTCAGTCTCTACATAAAAGCACTAAAATAGCTCTTCTAAAAAGTTATAATtagagaaaaaagataaaattatgTATTGCCTAACTGCACCGCTGTGAAATAGGTTACATAAGTAGGTTACCAATATGCATCAACCCATTCTTAAATTTTGTGATCTTAAAAGCATTATACCTCGATAATGGAGTCGCTTGTATTTCATACTTGGAAGAAGTTTCGAAAAATACCATAATATTAAGATAAGTCACGAGTAACAATAAATCAATATCAAGACTTTGTGAAATACTAGCATTTGAACGTTTACAGAGGTTGTAAACTCTCGTGTTGGTGTTGTATATAGAATTCGTCACAGTATTCTGGCATCATTGATATCAACTTGACAGAAGGATCCAATATAATTCCAATATCcaatatgccaaaaaaaaaaaaaaaaaaaaaaaagaatcctcGGAAAATGACAATGTTGCAGTAGCACCGttttaatgaaaatgacatTGACAAGTGTCGTAATGTGTATTCTGAATTTTACATGAATTAGTACTTGTAGTTTATTATCAAGCTTTGTGATGACGAATGGGCAAGATTgctttttgtaatgttttagttattttatgGGGATCACTAGAGATTGCAATCGTTTGAAAAATCTCGATAAAAGCTACCTAATCATGGGGAATTTGCAATATAGATTTCTACCTAAAGACTTAGTAAAATGTTGCTTTGTAGTATGTTGAAACCTAagttatattatttacaaactGAACACTTATGTTGTTCGAGCATTTAAGTCTTCAGAAGACTTAAGTAGCTCAGAGCCAAGCTAACAATTTCATGAAATTGTACTACGCCACTACCTAATTAGACAAAGCTTTGCCTATATAAAATGGTTAGTTTCTCCATATCAGAGAGCAgctttgtttaataaaatagtaataacagATTTCCCCCAACAACTTAAACTGCCTACAGAGAACGCATATTTGTGCGTAAAGTACCGTACTTGCTACAATTACTACACTACTTTGTTAAAGGAAATGTTGTTACTTTATCGTGCTGGTGTTATAGCGTAGATTTGAAATTGCACTGAGTGTAACCTCCATGTACGTCTTGTAATATCTTACTGTTACAATATGCTCGTTTTAACTGTTCCTCATGTGAATATAGACAGAAATATGTGTGTACATGCCACTGTTATTGACATCATCAGAAGAATAAA
>TU305577
tgttgagagagagaaataacgGTAAGggcaagtgagagagagagagagagagagagagagagagagagagagagaagattgtAGCACTTCCAATAAGAGTGGGAGTCCCCATAACGTTGATTTAAATATTATCCAGGTGACCACAGTAAGTCAAGGTCATAAAATTGTAATGTCATGACGGTCCTGCAAAGCGCTGGGGGTGGATTTTATGATCTGCAAATATAATGTGCTGGTGCAGTAAAGATGCATTAAAAAGCGGAGTGGAGGAAGGCTAATCCACATACCCAGGCTTGCAATGTGCTGGCCTCACTGGCGCGCTCTGCGGGCTGTTATAGAGGCAGGAAGCCTGTTTAATGGCTCTGGAAAAACACAACGCTTACACACCAGGCAGTCGACATGGATGTACGATAagcatcaacaacaacaacaacagcagcaacaacaacaacaatcaatCAATACGTGGATCATATCATATACAGATAAACAGATTTCAAGAAAGGCCGAAAAGGCTATGCAGCTAACAGCAGGCACTATGCGCTAAAGCCTGAAGCCTTTCAGGATCCCCGAACTACAGACTGTTTATCTTCAAACGGACGCACCTATTCGGATTATGTCTACTGTTCGGCGGTCGACATCAGGGACAAGCAGCAGAATGCATCTTCCCCCGAGTCTGAGATCGTTTCTTCCGGAAAGCACAAAGACGAGAAGGCTGAACTGGACCCAAGTAAGTTAAAAGCCATTCTTGTTTACAGCTGCATTTGAGACGCCTCGGGTTTATTGCGTTCGCTTGGTGGTTGGCTGTGTCCTCCGTCGTAAAACCAAGTTCTAAAGCCTTTCATCTGGCCCCTGCCGTTCTCGGCTGGCTCAAGTCTGCTTTTGGTGCTGTCCATAGAAGACAAACGCCGTAAGACAGGGCTGTAAAACGGGTAGCGGGTTATAAAACGGTCTCCTCGAAGGACAGGTCTGGAGAGGCAGTGAATTCTGAGCGAACACTGAATCTCAGTTAAAATTACAAGGTATAATTAGATAATCCCGTGGCCAATTGGATCCACGCGCGCTCCACCAGAAAGAAGCGATGCCCTTACACAAAATATCAAACACTTGAACTCGAAAAGGAATTTTTATTCAATATGTATCTAACGAGAGACCGGCGATACGAGGTGGCCAGAGTGCTGAACCTGACGGAACGACAGGTCAAAATCTGGTTTCAGAACCGAcgaatgaagatgaagaaaatgaaCAAGGAAAAGAGCGACAGCAAAGAATAAAACGTCCAAAACTTTTACTGAATACAGACTGAAGGAAAGTTTAGAAATTTGTCTTAAGTCTTAATAGTTATCTCCTTCCTTGCAACAGGAACAGAAAACATCAAGACACAATGATAGTGCTCTTAATACGGTGTAATTATGATTTCTTGTGACTGCAATTTTACCAACCTTTGTTTGTATTAACACTATAAGTAATTGCACAACTCAGCCTATTTGGATTTAGATTACGattctttattttacattctttaaGAAATGCCCCCGGCGTAGAAGCAAGACAATACTTGAACTCCTCAACTTCTAAACTTcgtaatttataatttttaccTGAA

Function

symbol description
hoxc8 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including anterior/posterior pattern specification; negative regulation of transcription by RNA polymerase II; and skeletal system morphogenesis. Located in microtubule cytoskeleton and nucleoplasm.
hoxc9 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system development. Located in aggresome and nucleoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305574 True 2159 lncRNA 0.39 2 20369995 20386813
TU305577 False 1603 lncRNA 0.43 3 20369995 20379334

Neighbor

gene id symbol gene type direction distance location
hoxc11a hoxc11,LOC108276183,LOC107715002,LOC108433364,LOC107593971,LOC107706974,LOC107664237 coding upstream 8716 20358172 ~ 20361279 (+)
hoxc12a hoxc12a,LOC108275575,LOC108433365,LOC103031159,LOC107664239,LOC107593973,LOC107697936,LOC107715004 coding upstream 19066 20347159 ~ 20350929 (+)
hoxc13a hoxc13,hoxc13a,LOC108275585,LOC103031462,LOC107715003 coding upstream 29448 20336971 ~ 20340547 (+)
rarga rarg,rarga,LOC107715005,LOC107593976,LOC107697942,LOC107664174,LOC107707012 coding upstream 101208 20232088 ~ 20268787 (+)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC108433413,LOC107707014,LOC107697944 coding upstream 171343 20183237 ~ 20198652 (+)
hoxc3a NA coding downstream 2344 20389157 ~ 20431053 (+)
hoxc6a hoxc6,hoxc6a,LOC108433405,LOC107593966,LOC103034651,LOC107664205,LOC107714999,LOC107706971,LOC107697939 coding downstream 8120 20394933 ~ 20398744 (+)
hoxc5a hoxc5 coding downstream 12883 20399696 ~ 20402543 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding downstream 24560 20411373 ~ 20413861 (+)
hoxc1a NA coding downstream 52441 20439254 ~ 20446982 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 260769 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 265955 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 270497 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 299747 20058251 ~ 20070248 (+)
G257813 NA non-coding upstream 303987 20065477 ~ 20066008 (+)
G258156 csad,LOC107599458,LOC107706996,LOC107697858 non-coding downstream 180977 20567790 ~ 20576789 (+)
G258162 NA non-coding downstream 224728 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 276869 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 295557 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 310172 20696985 ~ 20699668 (+)
si:ch73-206d17.1 LOC108275771 other upstream 664932 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 891100 19478302 ~ 19478895 (+)
pkig NA other upstream 1147436 19198426 ~ 19222559 (+)
fmnl3 LOC108276057,LOC108425567,LOC107716159 other upstream 1435676 18879481 ~ 18934319 (+)
LOC113530386 slc26a9 other upstream 3181618 17175701 ~ 17188377 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other downstream 3996 20390809 ~ 20398714 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other downstream 123431 20510244 ~ 20514195 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 516292 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 841507 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 1151232 21538045 ~ 21542427 (+)

Expression


Co-expression Network