G258156 (csad,LOC107599458,LOC107706996,LOC107697858)


Basic Information

Item Value
gene id G258156
gene name csad,LOC107599458,LOC107706996,LOC107697858
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20567790 ~ 20576789 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU305640
CTAGTTCACAAACCATTTTATTGTCAATCTGACATGTTGACACTTGTACTTtgtccatgaaaaaaaaatgtcattcattGATAAATTAAGTTGACTACAAACAGTAGCATGTGCCCTCTTGTGTTTCTCATTAAGACAAGTCTACACAATAGGACGTTAAAGTCTGACAGACAGTCTAAGACAGTCTAAGGAAaattccaccctgaaacacatcatatatgtttatatgaaaaaaaatcttctgatGTTCTAAGTGAGTCTGGTGGTATTTTGTcggttattcctgtgagaagttgtGATTGTgtgctgcactattgtcacagGGGAACATCGCTAacacagttacaatggcatttaatagggaaaaaaaaattatctcagACATAATGGAcgaagagcttcttttctcactcaccactTTTAGCAATGTTCAATGTCATTAATGAGAAGTCTCGTGTAGAATTAGTTGGAACAGCAAATGTTGGACTCCAGAATGCAATAGATGCAAGCTAATAAGACGTGTTTGCACCTGGAGTTACGGCAGAAACTCGGCTCTGCAATTTAAAAATCTATGATGACGAGTACGATGGagttgatggtggtattagcatgaaaggtctgtttgagcagagtgtacaggtgaggaggtgagagagctggccagaataaagcactaaagcgctgctgcatcgccCTTTTTCGGTAGAGGTGAATTCACTGGAATTCATTATGGGTAACACGGGAAACCTTTAGCTATAGGGAAAACAGACCAAACTGAAGTTAATCCAAAAAAGTCATCTCAGAatttatcataaaataaatcttttggaCAAAGGAAGAtcatatgttaaaaatattgtacatatgTTAAAGATCATACGTTATAAATATTGATAGtgagttgttcagggtggatttttttcctgtaagtaaaagaagaagaaaattcagATGTATTCAAACACACTTATGTATCAAAAGTTGATgcttacaaaaaaacaactagAACTAATTCATTACAATGGGTTTACATTCTGACTTACATAGCTACTAGACACCAGGGACCAATTTATTCTAACCCAGCAATTTCTGTTGCAGCCACATAAATTGATTCGTTGCATTAATATACATTCAGTTGTCAGTTTATTATAGCCAGTTTTACCAACATTCATCAGGTACAACTACCCTATAGATGAACAATTCCTatctgtagcccatctgttgctatgaACCATTTTCAGCCCCCTCTTCTCTGTCCATCAGTGATATTATATCTATAAAGTGCACCAGTATGACAGCGGTACCTAATAAACCGTCCATTTAGCTGATCTAGCACACATAAGTTCTTGATATTACAACATTATTGTCAGTAGGCTACTGACTATAAGAAAAGCTAGAAAAGCTCtcctttttcttcattaaaaaataaaagtaataaaattgaCCTATTGCTACACTCAATTTTTATCATGTTGACAAGAATGAAAAGGGTTGCAGTAAAACTGCAGGGATAGGTGTTTGATGTAAATTAAGATGCAAAAAGGAGTGGctgtaaaaatgtagaaattatttataaaatgatgcTTAAATATTGAAAAAGTAGCCACATGACTGAAGGACTGTGAGGAACCTGGAATctagaaagaaggaaagaaagaaagaacgaaagaacaaacacaaaagcagtCTAATCTAATCCTGCACAGGAAGAGGTCTGCTTCGAGTCAAAAGTTGGAAGAAGTCTGGAAGATAAACGAAGTCTACAGCcagaaaagaagaatgaaagaaggttgaacaggaagtgatgaatAATAGAAGCCCCAGCAATGTTTCTAAGAAACTTCATTTAGCAGTTCTAAGTCAGTGGTCCCCAATCTTATCAGCAAAGCGCCAGTGCTGTTCCAGctaaattacaaactgatttatGAAACTCACTGCTTGTCTAAGAAAATCAAAAGGCGATAGAGAGCAACCTTAAAGAATGCCTCTGGAAAGAACAATGATGGACAATGACTAAAGAACGAATGATGAACAGCACCCAGAGCTCATTTACAGATCTTTCCCCAGCCTCTCAATCTCGTCGAGGAAGAAGTCCAAGTCGCTGTGCTGCAGCTGGGTAGAAAGGACGACCATGCGGAAAAAATTGACTCGACCATCCAGAGGCTGATAACCCACCATCATAGAGCCATGTTTCATCATGCGTTCCTTGATGAGCGGTGCCACCTTGCTAATTTGTCCTGGTAATCTGTGTCATTCTCCTTCCCTCTCAGGCTGGGTGGCACAAACCAGAAGCACACGTTCACAAACTGCGGCTGTGGAGAAATATGAAGGAAACAACATTTACAAGCATTGTTACAGGTTGACCCGCTTCAGCTTGTACGGTTGAATAATTTTTAGTTTGACTGAATGCTAGTGCTTCTGTTTAGttgtggctctgtgtgtgtttgtgtgagtgtacaCTGCGGACATGTGTGTTTAGTTCTTTGTTTAGCTGCGTTTCTGTCTCACATTTGTTTCTAGTCAGTTGGTGGAACTGcagttttaaaggtgcaataggcaacatttttcagttcttactagtacaaataatgtggaaaattatgtagaaatgatcaaaaataatcGTTTAAGCCATTGTCTCAGAAAAAGTGTATTACAtagctaaaacaaaaacagtttggAAACCTGCCTTCAGGTCCGGAAGGTTTGTTTGTAATTGgattggcctcttgtcagtcattttatagacacaccCCCAACACCCCTTCACAtactcataaatcattatgaggagAAGTTGCATGTTTACAGAGCTGTAACTCGGCTGTCAAGCAGCTGAATGTCCACGTGCGCTTGAAAGTGATCTCATGACAGTCCTCGCTAATGGTAACTCTAGATGAACCGCCgttttgggggcggagcttggtGTATATTGGTGGAAATGGGGGTGAGatcaatgaattaaaaaaaaagtcattcaaatcttattcagcTCCACCCATTTAACTATTAGAGACCTATTTTCACAACTcatacctaatgcacctttaactgTATTAGATTTTAATACAACAATGTTACCTCAGAGACCAGCTGAAACCCTGCTCTTTTCTTCATCTCCTCAACAAGATACCTAAAGCAAACAGCAAGTTAATAATCCATTACCACACTGACTCATGTATTAGAATATATTAAATGAACTATATTCTGTTTTCTTAAAAtctgaattgattttttttgtcttgtttaccTTGTATTGGCGAAAGCCTTGTCGACCCGGTCAGCGAGGCCCTGCGAGCCGATAGCTTTCCACATGAGCCACAGTTTCAGACAATCCACCTTGCGTCCACACTGGATGGACTTATCCCCGGTGTCCAGATGTGTGTCGTAGAACTTGTCTTGCTGAAACAAGTAGGTGGCGTTGGCGCAGTAGCAGTGCATCAGCAGGTTCTGGTGAGAGAAACTGCATAAATAGGTTTTCCAAACTTGTGGTAGAGAGccatgcaaaagagaaaaaggaataCCTGTCGTTTTCAGAACTagtacaaaatgtcaaaatttcaccatgtgaagggttttcccaggccgccacacaATTTTCAGCGCTTGCTTACTTACTTTTATTCTCTCTATGCTGTCTACTGaactattatatttttttgataGATTGTACCACAGGATCATACCGTTGTGTCTCTCAGCAAAATAACGGAGCACTGAAGGCCAGTCGTCAGCATTTTATGTGGGTTCCAGGTTAGAGAGTTGGCCCtgaacacaacagaaaaaaaacatcaggcaATAGGACATCTGGAAAGAGGAAGTTGCTCCCTACTTTTTGTGGGTGTCACAATAAACACATGTTTATTGGAAGTTCTCTGGAGGCTGTGGGTTGACATTATTTCCTATGCAACATTAGTGTTAGCAAAAGAAGGAGCTTCAAGGTCTTCAATCTAGGTTTTACTTTTTactctgcacttttttttttgttttatgtgaaaACAGAAATTTCTATGTTTTCCATTGCACCTGatggaaatgttattaaaacatTACTGAAGATTTGCTGTTTCATATCCTTTTAGAGAAAAGGGGTTCTAGCTAAAAAGGGTAAACTGCACTATATGTAGTACAAACTGTATAAGATGTACACTACAGCAGTATGCAATTTTGAATGCAGCCCATAAGAAAAGATGATTTCTCCTCCATGTTCCTCAAATTTTCCTCACTGTTCCTCCACGTTAGATGGTTAACAATTCTAGCTTTCTACAGCAGGGTTatttggaaccttttctgaactTATTTCTAAGTGTAGTGTTTCAAAATGTTATTTCTCCACTATTTCTAGATTTCCCCTTATGTCCCTGTTCGGTACTCTTCGTACCCTGGCACAAATGGCAACATAGCTACAGTACAGGTCACTTCAGTGGAAATAAGCATAAAACATGGGATATACCTTTCAATTCCTGCTATTagatgtttgtgtttcttgGAAAACAGCACACTTCCTCCCCAAGCGGCCTATGGAACGGATAAAGGAGAAGGGTGTCTATTACAACAAGGCTGCTTATCTGTACTTTCAGATGACTTTCTGTTCCTTGACCAGTTTAGACATTACTTACTATTTTCTCAGAGCTaatgaaataacattttgtgCTTGCATAATAATCCAAAGGTGCTGTACATACAGGGAAATTACTTTACACAAGTGTCTCTTGTCTCATGTTATCATGTGTCATGTTCCATGTGGTTTTATGCAACATGACTTCTGATAAAGAGGACGTGGCTTACATCAACGTGCATCCACATTCCGTTCCTCTCAGTTATGTCAGCGATGCTCTCCAGAGGGTCAAAGGCTCCTTGTACGGTGGAGCCAGCTGTAGCGTTGACAAAGAACGGGTAAGCACCCTGTAGTAAAGAGAACATGCTAATCAAATGCCAACCACCACATTTTCATTATAGCAGTCATACTGAGTCACCTCTAAACCCCATACGTAGATCAGACTATAAAAATGTGGCACATTAAAACCACAGCCAAATTgtaaggtgtttttttgttcatgatttgcatttaattttcatgattaataaaatatgatggaAAAGTCAGTTGGAAGGATAATGCATATACTTGTGATTTGGCATGAACAATTTTAGCTTCAAGGTCTTCTGGGATCATTCTGCCACTGTGGGTACAGAGAGGTTGAAGAAGGATGAAGTGGACTCCAGGTGACGTGGCGTATGCAGAAAAGACAAGCAAAGGCCTTGTATAAACTAATGTACCTTTCGTCCACTTTCACGTGGTAAACGTTTTCCGTCCCGATACCTAGGAAGGCAGCCGACTTTTTAATCGAATAGTGGCTCTGCAAGGAACAAGGATGGAATTTGATTTATACTCttattcaaatacatttcaaagaaaaaaaaaacatactttttacttCTTACATTTCTGACCTATAAATACAAATCAAATCTCAAACGGAATGACATTGTTTTTATTAGTAAGATGATGCCTTTTGCTGGAGTTGCCAATTCATGTCTCATTTGCCTCTCACGTAAATTCTAATACCTGCCTGCATCAACAAATCTAAAAAAGTATGTTAAGTTAACTTTCAGTTTGGTAAATCATCTAGTAAAGTTTTGAAATTTAGCTAGATAagtttgctagctagttaagttttgtaATTTAGCCATGTAAATGAGCTAGCTAgataaattagctagctagttaagttttgtaaatcagcttgttaaattagctagctagttaagttagGTTTCTATTGTTAACATAATGTACCTTAGCATTCAGTCCAAAAGggttattaaacattagctaaccagCAAGTTATATTCTATGTATGTCTGAGTTAGCAGAATATTTTCACAATGACTGATTGCTTAGCGAACTAGCTAGACATGCAGAATTGGACATGATGAACTTGTGGTCAGCttttttcatcagttaaaaatatttattttttacgcTTTAATACTTTTTGACGTTCAGTTAAGTAGATATTTGCTTCCATAATTTTACTTTTGATTGATTTTGATGTAGCACCCATACGTCTACTTAAGCACAGTTTCCATGTACTTTTCCTAACCCTTGCAAGGCAAAGCAAACAGTTgtgatgatatttatttaacagaactCTGTTATTCTTATCTTTACCTCCTGTGATGTGAACACAGCCAGACGTGGGACAGACCACAGGCCTTGAGTCTTCACCTGCGGAAACGCCCAATATCGAGCCACATTCATGGCATACATGTTAGAAATAGAGCCTCCTGGGCAGAATATGCCATCCCCCTCGGACCAGCCCACTAGGGAGCGCAGACTGCGGAGAACCACATCCTCCATCAGAACAAAGACCGGAGCCACCTCATAGGTGTACCTGAAAGATACACCATTTTAAACTTTTGCAGATTCTGAGCTAGATATCAGTTAAGTATGgcataaaacacttggggcatgctgttataagttATAACTTAAAGTAAgagctttacctcagactgttactgacactgacactggagactccttcacaTAAACTTACACTGTATCAGTatttaaatacacatttattatcTGAATTAGTCGTTACTATtgaaatgtattagaacgagtgtattaatatgatttgtcttgcagctgagctactgtcagagttgctgttatagcaaattaatcaacccaatctgaccaatcataatcgagaattcagcagcgctctGGTATAATGATTATATTCCCTGCAAAATGAATTAGTAGTATGACGTTGATGGAATCTGTTATGGTTAAACTGCTATGCTGTAGATAATAGCAccacaaaaatgtgaaaacttttatcaaaatattttagcaGCTACCctttactaaataatatgtaCTTGTCATCAACGTCCTCATCTAGTAAGCCAATGCTATGGTGTACTGAAAACCCTGATACTGGGTTCTAGGGTTATGATGTTATGACATTTCCATATAGTTCCACCCCATATTCTATGTCTTGCATCTTTGTTTATATATTCTTATAATACAATATTGCTTAAGTATAAATGTTAATATGGAGACATTTATATAAAGAAGTCTCCAGTTttagtgttttgtaacagtcaggaagtTTGACAGGACAGTCTTGATGACAgaggtcttattaacttcaagagagtgaagaaaagagaaactggtgagggaatgatggACGTGccacaaaaacaaatgtcaatAGTTAAAGTTTCACTTGACATCACACAAATCcattatgcattatttttgcccatgtgttttattcctcacataatgCAATAAACATGCTTGGTTATCGCTTTTTGACTCCAGCTTTACTGCTGCCTCCAAACACGGATGAAGCGCTTTGCTTTGATGCACTGGTAAATCCTGAACTATATGCCAGTGACCCTTGGAGTGGCATGACGACACTGCACATGCATgcaatgaaatataaaatgtgtttcttgGATATTTTCTGAAATTCCTCCACTTTGATGATGCAAATGTTTCTGGTATTAGAGACCATGACGGACATGCAGTGATCTGTTCCTAAAAACATCACAGTGTTAAAACTTTCTTTGACAGTCCAAGATACACAGTCTATCTTACAGTGACCTTTGTGCTGCATTGTACTGAGAAAAAGGAACAGGCTGATTATTGTGTCTATAACATGAAGGCTATTGCGGTTATTCACCAGATGTATCATCTAGTAGCGACATTAGTAATGCTCTTATCTTTCCTTCAAGGGTGCATACTTGTGCCAACTAGGTTGCACTTACTGACTGGTGTTGAGTGTCTCTGTGAGGAGGCGTCCAGTCAGGGCATGGTAGTCCACTCCAGTGAACAGCTGATTGAAGAAGCGAGGGTGATCTGGAAAGAAAGAACATGCAgctgcagatttattttattcctcagTTCATTCATAATGAACAAGCAGAGATGAAGGTGGCTTACTGGTTTTCACACTGTATTTGGCGACATCATGTACTCTCTGCAGCAACTTTTCATTAGATTCCCCATGGTCTCTCAGCTCCAAGTCCAAAAGAGCCCTCAGTTGGTCAGGGTCCTTCCACTCACACACTTTTCCTTCACGTCGGTAGCCTTATGAACCGCTTCCTCCAGGATCACTTTGAAAGCCTCGGAGAGGAACTGCTCACCAACTGAACGGTCCAGTTCAGCTTCATCCACATGAAGGTGGCCATTTGTGACTTTGCTCACAGTGTGCTCTAAAGAATTGAACAAAATTATATGTAGAATGTAACTAAATACAAAGATGAGGCTGATATGACATCAGAGTTTTTGTGGATTTCCTTGTAACAGTTGATCTAATTAACACAATTAACATCTCACCAGAAATAATTTGCTAAGATATGTGTGCTTCTTGAGCTTTGAACTGGAGCTATGAGGGTAATGTAGTAGCTCATAAATGATGGATGTCTAACTGTATCCAGTTATTTGGTAATATAAGcatgaagaaaacaaaaccGCCGGTAATCTTCAACTCTAGATCCACTGGATGAGAGAGGAATTGATCTTGATCATAACTGAAATGACAAATGTCTGTGGCTGTGAAAGGATTCACTCACTCAGACTGAATTCACTGAATCAAACAGTGATCtgctgaaagagagaggaatgaaTCTAGGTtgtgaaatgattcactgactcaaataCTGATCTGCTAAACAAGATGGGAGTGAATCTCTCTcatgaaatgattcactgactcaaacattGATCTGGTGAGAGAAgtgaatctcagtcatgaccaGAAGGGTtaactgattcaaa

Function

symbol description
csad Predicted to enable carboxy-lyase activity and pyridoxal phosphate binding activity. Acts upstream of or within heart development and taurine biosynthetic process. Is expressed in several structures, including brain; digestive system; pronephric duct; solid lens vesicle; and somite border. Orthologous to human CSAD (cysteine sulfinic acid decarboxylase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU305640 True 8809 lncRNA 0.38 3 20567790 20576789

Neighbor

gene id symbol gene type direction distance location
copz1 copz1,LOC107664248 coding upstream 22993 20537706 ~ 20544797 (+)
hoxc1a NA coding upstream 120808 20439254 ~ 20446982 (+)
hoxc3a NA coding upstream 136737 20389157 ~ 20431053 (+)
hoxc4a hoxc4,hoxc4a,LOC108433407,LOC103034018,LOC107714997,LOC107598886,LOC107664204 coding upstream 153929 20411373 ~ 20413861 (+)
hoxc5a hoxc5 coding upstream 165247 20399696 ~ 20402543 (+)
lima1a LOC108275931 coding downstream 9378 20586167 ~ 20610713 (+)
igfbp6b igfbp6,igfbp6b,LOC108433391,LOC107697925,LOC107599019 coding downstream 84617 20661406 ~ 20666057 (+)
pip4k2ca pip4k2c,pip4k2ca,LOC107598997,LOC107714989,LOC107664235,LOC107697923,LOC107593957 coding downstream 91324 20668113 ~ 20680070 (+)
LOC113530755 gpr182,LOC108275868 coding downstream 107576 20684365 ~ 20686778 (+)
LOC113530407 gpr182,LOC108275868 coding downstream 112397 20689186 ~ 20691614 (+)
G258097 hoxc9,hoxc8,LOC107714926,LOC107664222,LOC103032829,LOC107593970 non-coding upstream 180977 20369995 ~ 20386813 (+)
G257803 kansl2,LOC107716132,LOC107591080 non-coding upstream 458564 20108390 ~ 20109226 (+)
G257802 kansl2,LOC107716132,LOC107687436 non-coding upstream 463750 20101008 ~ 20104040 (+)
G257814 NA non-coding upstream 468292 20099230 ~ 20099498 (+)
LOC113530699 NA non-coding upstream 497542 20058251 ~ 20070248 (+)
G258162 NA non-coding downstream 34752 20611541 ~ 20657067 (+)
G258273 NA non-coding downstream 86893 20663682 ~ 20680938 (+)
G258275 LOC108276173 non-coding downstream 105581 20682370 ~ 20756538 (+)
LOC117599265 NA non-coding downstream 120196 20696985 ~ 20699668 (+)
LOC117599266 NA non-coding downstream 131326 20708115 ~ 20711958 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 53595 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 169076 20390809 ~ 20398714 (+)
si:ch73-206d17.1 LOC108275771 other upstream 862727 19625529 ~ 19705063 (+)
G257622 LOC108276210 other upstream 1088895 19478302 ~ 19478895 (+)
pkig NA other upstream 1345231 19198426 ~ 19222559 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other downstream 326316 20903105 ~ 20907459 (+)
si:ch73-290k24.5 LOC108275473 other downstream 651531 21228320 ~ 21238999 (+)
LOC117599233 NA other downstream 961256 21538045 ~ 21542427 (+)
LOC113530514 LOC108275916 other downstream 2094609 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 2794955 23371744 ~ 23383653 (+)

Expression


Co-expression Network