G258883


Basic Information

Item Value
gene id G258883
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 21750011 ~ 21752454 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU306502
GCAAGATTCATTGCGTCAAGATTCATTTTATGGAATTTTCCACTGTCTATGTCAGACAGAAAAAGTCTGAAGTAAAGGAAATCTGCTGTAACTGCAGGAAATAACTTTCCAGAAGTGTTTTGGTGAAGGGTCTTTTGCAGCTTTTACGATGAAAACCCGGTACAATGGAGCAGACTTGAAGAAGCAGAAGCGTGTGAGCAGAAGAGCCCGGAGACCCACCAAGGCCTATTCCAGCTATATTTACAGACTGAAGAAGgCCAGCCCCGCTGTGACCAACACTGTTGTGGTACCCGGATGGCTGCGAGCAGAGCTGTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU306502 True 318 lncRNA 0.47 3 21750011 21752454

Neighbor

gene id symbol gene type direction distance location
LOC113530651 cdkl5,LOC108276197 coding upstream 1608 21674337 ~ 21748403 (+)
zmp:0000001174 rai2,LOC107653213,LOC107550168,LOC107752425 coding upstream 123266 21611803 ~ 21626745 (+)
LOC117599284 NA coding upstream 214645 21521346 ~ 21535366 (+)
LOC113530406 LOC108276167,LOC105022368 coding upstream 294163 21452268 ~ 21455848 (+)
vdra vdr,vdra,LOC103045919,LOC108435544,LOC107701250,LOC107702164,LOC107565314 coding upstream 312148 21378129 ~ 21437863 (+)
LOC113530955 ap1s2,zgc:162858,LOC108275964,LOC107564403,LOC107653210,LOC103463884,LOC106942561,LOC108435569,LOC106921341,LOC102795551,LOC107095773,LOC101477195,LOC104928285,LOC107752427,LOC107396045,LOC101174095 coding downstream 2393 21754847 ~ 21795371 (+)
syap1 syap1 coding downstream 47370 21799824 ~ 21806660 (+)
fbxl5 fbxl5,LOC101481374 coding downstream 55860 21808314 ~ 21828623 (+)
abcg2a LOC108275736,LOC108435561 coding downstream 86535 21838989 ~ 21857859 (+)
LOC113530692 NA coding downstream 203104 21955558 ~ 21958696 (+)
LOC113530300 NA non-coding upstream 147543 21600622 ~ 21602468 (+)
G258753 NA non-coding upstream 193573 21479232 ~ 21556438 (+)
G258758 NA non-coding upstream 239017 21499978 ~ 21510994 (+)
G258689 NA non-coding upstream 363910 21384291 ~ 21386101 (+)
G258680 NA non-coding upstream 395281 21354440 ~ 21354730 (+)
LOC117599289 NA non-coding downstream 217924 21970378 ~ 21982618 (+)
G259086 NA non-coding downstream 253876 22006330 ~ 22006530 (+)
G259087 NA non-coding downstream 254254 22006708 ~ 22007039 (+)
G259093 cpeb2,LOC108276376 non-coding downstream 263657 22016111 ~ 22022472 (+)
G259094 NA non-coding downstream 273354 22025808 ~ 22026642 (+)
LOC117599233 NA other upstream 207584 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 511012 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 842552 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 1235816 20510244 ~ 20514195 (+)
G258096 hoxc6,hoxc6a,LOC107593966,LOC108433405,LOC107664205,LOC107714999,LOC103034651 other upstream 1351297 20390809 ~ 20398714 (+)
LOC113530514 LOC108275916 other downstream 918944 22671398 ~ 22680542 (+)
LOC117599309 NA other downstream 1619290 23371744 ~ 23383653 (+)
G259993 NA other downstream 1635084 23387538 ~ 23389314 (+)
G260415 NA other downstream 2279773 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 2516123 24268577 ~ 24269267 (+)

Expression


Co-expression Network