G259968


Basic Information

Item Value
gene id G259968
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23332680 ~ 23348937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307742
ttatttattcaaccttttttatttttacacaatttactgtacatataaaTCAACCAGTGAATGCGCAGAAACTTTAGAGGAGCCTtgtaaaaggatttttttttcatagagaattaatcaaatATTCACACAATGTACAAGATTTAGTTGATGTATAGTTTACACAGTTTAGTTTCAGTAGCCAGTATTTAACATGATAGGAAAGCAACCATAAGAGAACTCCACATTAGCGTCAACGTGAGTTTACATACAGCAGGAAACAGAAGACgctgttctttttatttttgatcacaAAAGTCTGTTATATTCAGCGAGGGGCTGAGTACTGTGCTTAATTCTGCAAAAGGTAAAAAGAACCAGAATTCAAGAAGCTAATGAAACACCCCATAAACCAGGCTACACATTTCTAATATCTCTCccgtagagagagagagagagagagagagcgagagcgtgCGTAGATGTGTGATTATTAAAGAGATCAGGTTGTGCATGAAAGAGTTCAAGTGCTGATCTGGATCAGGTTTAATCTAAATATCAAATCTCTTTGTGCTTAAAGTGATCCAGATTCAGCATATATCTTGGTGAATATGACACTCTGTATCACTCCAGTGGTAAAGACCAGTATTTCAAATGCGCtacaataatattctgggtGCAAACTAGTCATGTGCCGATATTTACGGGTTTTATCACAGTTCATAATATTGCTACAGTCTTGTCTTTTAGTGATAATTAACTACTGTTTTCAAATACTTACTTATCCCTGTTCTTATTCCCTTCTGTACTAGCTTATATAACAGACTTTTTTTGTAGAATTTACCGATTCAGAAAGACTTCAGCGATTCTCCAAAACCCTCTTATCCACAATAACAATATcttacaaatgtaaatatgatcTATAAACGGTGATCAGCACAGATGCAGTAGAGCTCCAGAATATGAAACTAAGACATTTCGAAATAAACCCCCTATAAAACAGAGGGCGTTAAGAGTGCAGATGATCAGCACTCGCTTTCCACCTGTGAGAAATGAATAGTATTTTATTGCAAAAGGTgaacagtgaagtgtgtgtgtgtgtgtgtgtgtgtagtcTGCTACAGGAGtctggacgtgtgtgtgtgtgatgtaagtTTCACTAGTGatgtttcagttttaaaatgtattgctCACTGGTGTGTTCACTGGGATAAAAGGTTATAAcagttgtgggtttttttttttttttgccaagtcACATTTAAGGGTTCACTTCAGCACCCTGTGTAGCAATACAGCTCACATGCAGCTCTACTTATAAACCTTTATTACAACTAACACAGCTGTCttaaattcataaatgttaaGATCTGGACTAAAAAATGTAGGCTGGACTAAACAGAGTCCAAGGCCAGACTAAAAGGAATTCTTTGGCTAAAGCATGCCCAAGGCTGGACTAAACTGAGTTCCTAGGACTAGTTCCTAAATCTAGGGAGTCTGAGGCCAGACTAACAAGAATTATAGGACTAAAAGTCCACAGACAGACTAAACCAAGGTCTAGGACTAGAGAGGCCAGACTACAGAGTCTAAGGCCAGCCAGTTATTTTGCAATAAGGAGTCCATGTTGTTCCTTCATCTTGGCTGTATCACAAACTCTGCTTCTATTTGCTCCAAAACAGCTTTGTTTAGAGAGCTTGTGTTTCTAGGTAGAACCAAGCATGACTTCAGAACAAGACTCCATCTTACTTTCCCCATTCAGGAGATGCATGCAGATCGTTAAATAAATCAGTCCCTTTATAAAAGAATTATAGCTCAGTGATGATCCGTGTGCTGTGAATGAGTTTGTTACCTCATTTCTCAGAGTTTTATAAGTAGAGCTGCACAAAGTAACATGATAATCATTAATAGCAAAACACAGCAATATTCAGACGATTTCTCCAGCGGTCTCTGAAAGCTTTGTTAGGTTGTGGGACTGATCCTGGTTAGCTTCACCAAAAGACTACAGTCATAATATTGCAATATAACCACCATATTATTTAActtttgtttatattgtgaAAAGTTATAAACTTTTATTACAACTAAATGTCCATAATCCAATCCATGTCTATTACGTTTATAGTTAAACAACTCCCAGCAGTCAGGTGAATAATTTCAGCTCTTAacaaattttgtttatatagtgTTATGTTGGTTATGTGATAATCTTTTCTTTCTGTGACCcagtaaaatgcatttaatccTGCGTTAAGGGGGCAGTGAGAACCGCTGACGTGAAATAGAAAACGCTcatcattccagatttatccAGATCTAACGAGACAGGCTTGCTAGACGAGTTTGTTTCTGTGCTGCATCACGGTATTatatcgtgtgtgtgtctgtgt
>TU307745
ttatttattcaaccttttttatttttacacaatttactgtacatataaaTCAACCAGTGAATGCGCAGAAACTTTAGAGGAGCCTtgtaaaaggatttttttttcatagagaattaatcaaatATTCACACAATGTACAAGATTTAGTTGATGTATAGTTTACACAGTTTAGTTTCAGTAGCCAGTATTTAACATGATAGGAAAGCAACCATAAGAGAACTCCACATTAGCGTCAACGTGAGTTTACATACAGCAGGAAACAGAAGACgctgttctttttatttttgatcacaAAAGTCTGTTATATTCAGCGAGGGGCTGAGTACTGTGCTTAATTCTGCAAAAGGTAAAAAGAACCAGAATTCAAGAAGCTAATGAAACACCCCATAAACCAGGCTACACATTTCTAATATCTCTCccgtagagagagagagagagagagagagcgagagcgtgCGTAGATGTGTGATTATTAAAGAGATCAGGTTGTGCATGAAAGAGTTCAAGTGCTGATCTGGATCAGGTTTAATCTAAATATCAAATCTCTTTGTGCTTAAAGTGATCCAGATTCAGCATATATCTTGGTGAATATGACACTCTGTATCACTCCAGTGGTAAAGACCAGTATTTCAAATGCGCtacaataatattctgggtGCAAACTAGTCATGTGCCGATATTTACGGGTTTTATCACAGTTCATAATATTGCTACAGTCTTGTCTTTTAGTGATAATTAACTACTGTTTTCAAATACTTACTTATCCCTGTTCTTATTCCCTTCTGTACTAGCTTATATAACAGACTTTTTTTGTAGAATTTACCGATTCAGAAAGACTTCAGCGATTCTCCAAAACCCTCTTATCCACAATAACAATATcttacaaatgtaaatatgatcTATAAACGGTGATCAGCACAGATGCAGTAGAGCTCCAGAATATGAAACTAAGACATTTCGAAATAAACCCCCTATAAAACAGAGGGCGTTAAGAGTGCAGATGATCAGCACTCGCTTTCCACCTGTGAGAAATGAATAGTATTTTATTGCAAAAGGTgaacagtgaagtgtgtgtgtgtgtgtgttttcagagtcTGCTACAGGAGtctggacgtgtgtgtgtgtgatgtaagtTTCACTAGTGatgtttcagttttaaaatgtattgctCACTGGTGTGTTCACTGGGATAAAAGGTTATAAcagttgtgggtttttttttttttttgccaagtcACATTTAAGGGTTCACTTCAGCACCCTGTGTAGCAATACAGCTCACATGCAGCTCTACTTATAAACCTTTATTACAACTAACACAGCTGTCttaaattcataaatgttaaGATCTGGACTAAAAAATGTAGGCTGGACTAAACAGAGTCCAAGGCCAGACTAAAAGGAATTCTTTGGCTAAAGCATGCCCAAGGCTGGACTAAACTGAGTTCCTAGGACTAGTTCCTAAATCTAGGGAGTCTGAGGCCAGACTAACAAGAATTATAGGACTAAAAGTCCACAGACAGACTAAACCAAGGTCTAGGACTAGAGAGGCCAGACTACAGAGTCTAAGGCCAGCCAGTTATTTTGCAATAAGGAGTCCATGTTGTTCCTTCATCTTGGCTGTATCACAAACTCTGCTTCTATTTGCTCCAAAACAGCTTTGTTTAGAGAGCTTGTGTTTCTAGGTAGAACCAAGCATGACTTCAGAACAAGACTCCATCTTACTTTCCCCATTCAGGAGATGCATGCAGATCGTTAAATAAATCAGTCCCTTTATAAAAGAATTATAGCTCAGTGATGATCCGTGTGCTGTGAATGAGTTTGTTACCTCATTTCTCAGAGTTTTATAAGTAGAGCTGCACAAAGTAACATGATAATCATTAATAGCAAAACACAGCAATATTCAGACGATTTCTCCAGCGGTCTCTGAAAGCTTTGTTAGGTTGTGGGACTGATCCTGGTTAGCTTCACCAAAAGACTACAGTCATAATATTGCAATATAACCACCATATTATTTAActtttgtttatattgtgaAAAGTTATAAACTTTTATTACAACTAAATGTCCATAATCCAATCCATGTCTATTACGTTTATAGTTAAACAACTCCCAGCAGTCAGGTGAATAATTTCAGCTCTTAacaaattttgtttatatagtgTTATGTTGGTTATGTGATAATCTTTTCTTTCTGTGACCcagtaaaatgcatttaatccTGCGTTAAGGGGGCAGTGAGAACCGCTGACGTGAAATAGAAAACGCTcatcattccagatttatccAGATCTAACGAGACAGGCTTGCTAGACGAGTTTGTTTCTGTGCTGCATCACGGTATTatatcgtgtgtgtgtgtgtgtgggtgtgggtgtgggtgtgacACACCACTTCTGAGAGAAAATGAGCTTCTGTATCTGTGACGTTCAGTACCTGTTTTGGAAGAGGAACTATAAAGGTTCCTGGAAACAAAAAGGGTGTGACTGACCAGCAAATTAGTTACTaatgagtttaaaaatatatttataatgtacacattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307742 False 2366 lncRNA 0.37 3 23332680 23335335
TU307745 True 2544 lncRNA 0.37 4 23332680 23348937

Neighbor

gene id symbol gene type direction distance location
znf341 znf341 coding upstream 1414 23319361 ~ 23331266 (+)
tti1 tti1 coding upstream 137425 23186491 ~ 23195255 (+)
tgm2a tgm2 coding upstream 153357 23172257 ~ 23179323 (+)
si:dkey-65j6.2 kiaa1755 coding upstream 160929 23152604 ~ 23171751 (+)
myl9a LOC108276062,LOC103022187,LOC108439470,LOC107737046,LOC107653232,LOC107569439 coding upstream 321219 23006566 ~ 23011461 (+)
LOC113530556 NA coding downstream 58872 23407809 ~ 23411399 (+)
LOC113530872 NA coding downstream 65880 23414817 ~ 23421228 (+)
LOC113530918 NA coding downstream 73257 23422194 ~ 23433656 (+)
LOC113530555 NA coding downstream 91559 23440496 ~ 23443625 (+)
LOC113530919 NA coding downstream 98692 23447629 ~ 23450712 (+)
G259962 NA non-coding upstream 24088 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 54771 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 268111 23026446 ~ 23064569 (+)
G259539 NA non-coding upstream 310232 23021970 ~ 23022448 (+)
G259536 NA non-coding upstream 316784 23013384 ~ 23015896 (+)
G260009 NA non-coding downstream 119889 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 124976 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 178491 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 205659 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 477955 23826892 ~ 23827631 (+)
LOC113530514 LOC108275916 other upstream 652138 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1790253 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2093681 21228320 ~ 21238999 (+)
ubxn10 ubxn10,LOC108275535,LOC108433381,LOC107385551,LOC107699345 other upstream 2425221 20903105 ~ 20907459 (+)
LOC113530729 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107714994 other upstream 2818485 20510244 ~ 20514195 (+)
LOC117599309 NA other downstream 22807 23371744 ~ 23383653 (+)
G259993 NA other downstream 38601 23387538 ~ 23389314 (+)
G260415 NA other downstream 683290 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 919640 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 1051647 24400584 ~ 24453538 (+)

Expression


Co-expression Network