G260222


Basic Information

Item Value
gene id G260222
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23826892 ~ 23827631 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308085
GTGAGGGGGCGGGACCGAGACAGCACCTGTGCCGTGCCAGAGCTTCGTAGGGGCCTGTCCCACGCTGCACATCTGCATGCCGTTCCTGTGACAACACGTCTGATTGCGGAAAGactcgccacacacacacacacacacacttctgcactTCTGATCAACATCTCAGTGTTTTTACAGAGAGAGTTCAACTGGCCGCATTGTGTAACACACTATCATCACGTTTAACTCCTTAGCTACGCAAGGAAAACTGCGGTAGTTAACTACGGAAAACGACGACTTTCCTGATCTTTTCCTCGTACAGTATTGCGCAAAAGTACTTcagcacatgtaaagaaatgctgtaaagcaaagatgacttcaaaaacaaaattaaattcaacattttctacataaaacaaatatgttaaagagcagtaaacagcacCAAACTAAACAAAGGCAGTGTTTggcatcagtagtctcaggtaaacttagtgcagttttataagggaATTGGCTGGTAAGAttttctgagcatcttggacaatctgccacagttcttctggagactctaTTACACTTGCTTATTATTGCAGCTAATCTCTGACAGTCTTCATTATGGTTTTTTCTCTGAAACATGGTCTTTTAGGTCATATGTTACTTTCTTTCCTGACATACAAATGtctttctgttaaaaaaaaaaacctactgaTGCAGTAATGCTGAAGATGTCAAATATAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU308085 True 720 lncRNA 0.41 2 23826892 23827631

Neighbor

gene id symbol gene type direction distance location
znhit6 znhit6 coding upstream 28863 23769235 ~ 23798029 (+)
LOC113530587 col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408 coding upstream 63355 23672046 ~ 23763537 (+)
si:ch211-149b19.3 LOC108275812,LOC108441537 coding upstream 184328 23636247 ~ 23642564 (+)
si:ch211-149b19.2 LOC108275803 coding upstream 192122 23630593 ~ 23634770 (+)
rnf150b rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535 coding upstream 209725 23605104 ~ 23617167 (+)
c16h1orf52 c15h1orf52 coding downstream 45186 23872817 ~ 23875387 (+)
syde2 syde2 coding downstream 61075 23888706 ~ 23921976 (+)
mcoln3b mcoln3 coding downstream 124029 23951660 ~ 23967886 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding downstream 220385 24048016 ~ 24055524 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding downstream 263491 24091122 ~ 24131107 (+)
G260074 NA non-coding upstream 264508 23527428 ~ 23562384 (+)
G260083 NA non-coding upstream 271815 23554596 ~ 23555077 (+)
G260011 NA non-coding upstream 352448 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 357835 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 464602 23344862 ~ 23362290 (+)
G260223 NA non-coding downstream 34011 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 40020 23867651 ~ 23869556 (+)
G260232 NA non-coding downstream 90250 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 174918 24002549 ~ 24003381 (+)
LOC117599260 NA non-coding downstream 183044 24010675 ~ 24013004 (+)
G259993 NA other upstream 437578 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 443239 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1146350 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2284465 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2587893 21228320 ~ 21238999 (+)
G260415 NA other downstream 204596 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 440946 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 572953 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 797306 24624937 ~ 24636129 (+)

Expression


Co-expression Network