LOC113530587 (col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408)


Basic Information

Item Value
gene id LOC113530587
gene name col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23672046 ~ 23763537 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034311847.1
GCAGGGATGAGCGCGCGCGGCTCCACTTCTGCACAGCGCAAGTCGAGGCACGTGCGGCACCCGCTGCCCGgggctacagagagagagagagagagagagagagagagacaacccAGACCTTCCCACCTCCCTCCCGGAGGAGCTTCTGCATTACCGAACCCCGGCTTCTCTGTACTTCGGATCCGGTCCTTGCACGTGCGCGCAGGACCGACACCGAGTAAGAACATCCCGGCGCGCGCGCGCGTCCTCATCGCCGTTAACACGCGGAGGGGATTAGGAGGGGGTGTAAAGTtttccacagagagagagagagagagagagagagagaacttgaGAGCACCTCAAGTTTCTGTCTTGAGGAAAATGAGGAGAGTTTGAGGATCTCGTGCTTTTTTTCACCCTCACCGGCCGCCACCGAGCTCCGGCTCGCGCTCCCGGTCTCCTCTGGCGCGCGATTCCGCTTTCACCCAGGACTCTGCTGCTCGGACAAATGCATACAAATGCATTTAGGAGCCCAACGGACAAGGGGCGGCCGCGTTGCACAAACgagagCCCTCCTTCTGCTCCTGTCAGTATGTTTCACTATGCTATCTGCAGAAGAACATTCACAAACTCAAGGTGTAGATCTTCTTCTCCAGCTGGGCCTGTCCAGCCGCAGAGACGTCACCCACTCCTCTTGGATGATGACCTCACCCCCCCTTATTTCTTCcctcccatctctctctatccttcCCCCTGGGGTCGGGGTGACTCTGGACCGTGATGCCGTGATTGAAACCCCTGTAGCGAGTGTCCTTCCCGCAGGCATGGAGAAGGAGTTTTCCCTGATAGTGAGCCTCAACTCCAAGCGTGCCACCAATGCCTTTCTGTTCAGCATGCGGGATGGAGTGGACCGGCTCCAGTTTGGTCTGCAGCTTCTGCCCAATCGGGTGGTGGTGTACACAGGTGACAAAGCATCCGTCTACTTCAGCTACGAAGCGCAGGACGGACGGTGGCACTCGTTTGCAGTGGCGGTGCGTCCACGCTCTGTGTCATTCTTTGGCCAATGTGGGGGACTACACTACAGTGAAGAGACACTGACCAGGCCACGAATGGTGGTCTCAAATGGCCGGGTGGCCATCGGAAAGATGAGCTCCAGGGCAGCACAGTTTGAAGGCTCTCTGTGCCAGCTGGAGATATATCCATCAGCGCAGGTCGCAGCACATTACTGtgactatgttaaaaaaaactgcagactTGCAGACACTTTCCGATCTCCATTCCCTTCCACATCACCTTCCCTAATGTCCTCTACGACCTCCCCTACttcctctgaaacacacacacaaaacccagcCAACTCCACACTCAGGAACTCTATAGGCAAAATTAACCCTACAACTGCGTCTTTTTGGACTACACTGACATCGAGTGCCACTCGGACTGTTGGTCCGTCTCCAAGCCCCTTCAGGCCAACGCATTCCCCAGTTCTTACTCCAAGAACTACTACAAGCACCCCTCCAAGTGAAGGTAGATCCTATGAGGAGAACAACACTGAGGATCAGCGGCTGCTGAGAAGACCCCGTGCCACTCGGGCCACTCCAAACCTGATCTCTCACCACAGGAAGAACCAGCTGAGTAACGACAATGACTCCCACCATCCAGATCTCTCAGAGCCTCAAATGAAGCTGAACGGTGCGACCTTATACAGACAGCAAGGGTACAACAACCAGCTTGAACGTCTTGAGGAATACGGCGAGGAACGGACATACGACTCAGGGGTATATGGATACGACTATGGATTTGAGGATGGAGATTATTTTTTGGACTATGATGGTTTTGATGGTCTGAAAGGGGATCCAGGCCCTCCGGGTCCTCCCGGTCCCCCCGGTCTCCCTGGGCCAGCTGGAAAGAGAGGACCACGGGGTCCTCCTGGTCCTCATGGGATTCCCGGCCCTCCTGGATTACCTGGCCCCAAGGGTGCGAAAGGTGACCCCGGGCTGTCCCCAGGTCAGGCGACGAAAGGAGAACAGGGTGAGAGAGGACCACCTGGTCTTCCAGGCCCCAAAGGTTTTCCAGGACCAGTGGGTCCCAAAGGCTATCCAGGACCACCGGGTCAGCCAGGAGAACAGGGTTTGCCAGGATTGCCGGGCATGGTCGGGGCGGCAGGTTACCCTGGCAGGCAGGGACTGGCAGGCCCAGAGGGAAACCCAGGCCCTAAAGGTGTCAATGGTTTTATCGGACCCCCAGGAGCACCAGGAGCACCGGGCATACAGGGAGAAAGAGGGATACCAGGACCTGTGGGGAAGAACGGACCCAAAGGAAGACAGggCGTGATTGGAGACGTTGGGGAAAGGGGTCCACCTGGGCCTGACGGGAATCAGGGGCCTGTTGGAGCAACTGGCACCGGTGGCTTCCCAGGCCTCAGagGCAACCCTGGGCCTGAGGGACGTCGCGGACTACCTGGCATTGTTGGACCTCAGGGCCTGCCTGGAGGTGTGGGACCACCTGGATTGAAAGGTGATAAGGGAGAACCTGGATTACGGGGGGAACCAGGAGACTATGGCTACCAGGGTGACAAGGGGGCTGCAGGTATTCCTGGACCACCAGGCCCACGTGGAAAACCCGGACCAATGGGGAAGACAGGTGACCTAGGTGCCCCAGGACCACCAGGGCCTCCTGGACCTGAGGGATTTCCTGGAGACATTGGGGTTCCTGGTCCCAACGGCCCTCCAGGCCCAAAGgGTGTTCAGGGAGCGAGGGGCCCTCCAGGGCCTTTGGGGCCAAAGGGAACAGAGGGAGATGAAGGCCCTTTGGGTCCACCTGGAGGTCCTGGCCCCACTGGCAGGCCTGGAAGGAAAGGTTATATTGGTGAGCCCGGACCTGAAGGACCGAAGGGTGAAGTTGGTGACCAGGGAAACGTCGGCAAGAGCGGCCCTCCAGGAGAAGAAGGTCTTCCAGGAATTCCAGGAGTGGCTGGCCCACCTGGGGAAAAAgGAGATCGTGGTCCAGCAGGTCCTTTGGGTCCACCAGGAGAGAAAGGTTCAATGGGCTATCCAGGCTTGCCAGGAGGTCCGGGAGATGTCGGCCCACAAGGCCCACCAGGCCTGACAGGTCAGAGGGGTACTCCCGGTGTTCCTGGGACAAAAGGAAGGAGGGGGCCAAGAGGAGCTGATGGACCACCTGGAGAGCCAGGACCAGAGGGCATCAAGGGAGAAAAGGGCGGGCCAGGCCAGAAAGGAGCTACAGGGTTTGTTGGCAAAGCAGGAAGTCCAGGGAAACGAGGCTCTCCAGGGCCACCGGGTGTTGCAGGTCCATCTGGAAGATCTGGTGAAAGAGGACCTCATGGTGAACCTgGACCTAAAGGGCCACCGGGGGAAACGGGAGCAGACGGAGAGCAAGGACCTGAGGGGCCTCCAGGACCTGAAGGTGAACAGGGACCTGCTGGAGAACCCGGAGCCAAGGGTGAAATTGGACCTGTGGGTGCTGAAGGGGAGCAAGGGCAAGAAGGTGTAAGGggGCCTCCAGGTCCAGCAGGGGAAGATGGTCCTCAGGGAAAGGACGGGCCAAAGGGTGAACAAGGTGACCGCGGCGCAATGGGAGAGCCTGGGGAAAGGGGCGAGGTCGGTGACCCCGGCCCTCCAGGACCTCCTGGAGACGCTGGAGCAAAAGGATTCCCGGGACCCGAAGGAAAACAAGGACCACCAGGCAAACGTGGACGTCATGGAAAGAAGGGTGACCAGGGTCCATCGGGTCAGCCAGGAGAGATGGGTCCTGCTGGCGAAAATGGACAGGAAGGAGAGCGAGGACTGAAAGGAGCTCGTGGAACCAGAGGACCACAGGGTCAACCCGGAGTTATGGGACCGCAGGGGGAACCAGGAATGGAAGGGTACACAGGTCATGTTGGCAAGCCTGGTCCACCTGGCCCCCCAGGACCTAAAGGTGAAAAGGGTTATCCAGGAGAGGACAGCAGGACTCCAGGACCGCCGGGGCCCTTAGGTGAACCAGGTCCTCCAGGTGAGAGAGGTGACAGAGGAGACCCAGGAGATAAGGGATATCAGGGTCACGTTGGGGTCACCGGTGCTCGAGGGTCAGTTGGACAGCAGGGGGCGCCAGGATCACCTGGAATGCCTGGAGAAACCGGACCTGAAGGAGAAAAAGgaactcagggacaGCCAGGAAAAAAGGGTGCTCAGGGTCAGACCGGTTCTCCTGGTCCAGAGggACCTATAGGTTTGCCAGGGCCCAAAGGGATGATGGGATATCCTGGACCTGATGGTCCTCCAGGGTTGCCCGGGTTACCAGGACTGCCTGGCCTGATTGGTCACACAGGTCAGCGTGGCACGACAGGCATTGAGGGGAGGGCGGGACTTCCTGGTCCGCGTGGTGAGCTCGGGCTACCTGGTGCGATTGGAGACAGAGGAGAGCCTGGGATACAGggaGAGAGGGGTTTGCCGGGCGACAGAGGGGCAGCAGGTGCTAAGGGCTTGCAGGGTGCCCCTGGAGACCAGGGCAGAAAGGGTGATcctggggtcaaaggtcaaccggGGGAAGTTGGAGACCCAGGCATCTTAGGACTTCAGGGTTTCCCAGGACcgaagGGGCCGAGTGGAGATTTAGGCTTTGCTGGAGTTCCAGGACCCAAAGGACCGCTGGGTACACTGggtttCACAGGTCCTGTTGGTCCAGTCGGTATGATCGGTCCAGTCGGAAGACCTGGTCCGCAGGGTCCTAAAGGAGGAACAGGAGAGATGGGACCTCAGGGGCCACGCGGTAGTCCAGGACCAAGGggtCTTCCAGGCGCTCCAGGACCATCGAGACGTGTGCGTGTGGGAGGAGCCATGCTGACTGTCATGGAATCTGACACACAAGTGCATGAGagctaCCAGAACGCCGAGGCATCCGTGTCCGTGCAGAACAGCCGAGGTCCTCAGGACTCTGCACTACCTGAGCACCGTCATCTCTGACATCAGGACCCCGGCAGGCACCCGGGAAAACCCCGCCCGCTTCTGCAAAGACCTGCTGGACTGCAAACCCAAGATGGCCGACGGAATGTTCTGGATCGACCCGAACCTCGGCTGCTCATCTGACGCCATCCAGGTGTTCTGTAACTTCACAGCTGGAGGCCAGACCTGCCTTTCCCCCCTCTCTAG

Function

symbol description
col24a1 Predicted to be an extracellular matrix structural constituent. Predicted to be involved in collagen-activated tyrosine kinase receptor signaling pathway and extracellular matrix organization. Predicted to be part of collagen type IV trimer. Predicted to be active in extracellular matrix and extracellular space.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034311847.1 True 5132 mRNA 0.59 59 23672046 23763537

Neighbor

gene id symbol gene type direction distance location
si:ch211-149b19.3 LOC108275812,LOC108441537 coding upstream 29482 23636247 ~ 23642564 (+)
si:ch211-149b19.2 LOC108275803 coding upstream 37276 23630593 ~ 23634770 (+)
rnf150b rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535 coding upstream 54879 23605104 ~ 23617167 (+)
LOC113530551 NA coding upstream 67561 23584779 ~ 23604485 (+)
LOC113530971 NA coding upstream 88067 23572197 ~ 23583979 (+)
znhit6 znhit6 coding downstream 5698 23769235 ~ 23798029 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding downstream 45943 23809480 ~ 23864438 (+)
c16h1orf52 c15h1orf52 coding downstream 109280 23872817 ~ 23875387 (+)
syde2 syde2 coding downstream 125169 23888706 ~ 23921976 (+)
mcoln3b mcoln3 coding downstream 188123 23951660 ~ 23967886 (+)
G260074 NA non-coding upstream 109662 23527428 ~ 23562384 (+)
G260083 NA non-coding upstream 116969 23554596 ~ 23555077 (+)
G260011 NA non-coding upstream 197602 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 202989 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 309756 23344862 ~ 23362290 (+)
G260222 NA non-coding downstream 63355 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 98105 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 104114 23867651 ~ 23869556 (+)
G260232 NA non-coding downstream 154344 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 239012 24002549 ~ 24003381 (+)
G259993 NA other upstream 282732 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 288393 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 991504 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2129619 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2433047 21228320 ~ 21238999 (+)
G260415 NA other downstream 268690 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 505040 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 637047 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 861400 24624937 ~ 24636129 (+)

Expression


Co-expression Network