mcoln3b (mcoln3)


Basic Information

Item Value
gene id mcoln3b
gene name mcoln3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23951660 ~ 23967886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026921140.2
TTTATCTGTCAGCCGGTGAAGTCGAGCGGCTAGTGATTCGGCGCTGATTTCGTGATTTTTGTGAGATTTTGGAGTGGAATTGAGTCGAGTTAAGTGTTGAGTGACAGATGAGGATGTCTACTTCAGAGCTGTGGGACTTTTCCGCTCTTTAATTTCGTCTTGAGTGAGTTAGAGGAGTTTTTCTGGGAGAAGcgtcgctgctgctgctgctgctgctgctgtggtgctcagctgtgaatgagctgcagacATGGATGACTTGGGAGCTTCCTATCTGGCCTTTAACGATTTTAACAGCAATGGCGGCTCGCTGTGGGCGGAGTCACTGGCCCATCAGGAGCGTCAGGAGGTGGAGAGCTTCAGGAGGAAACTCAAATACTTCTTCATGAACCCCTGCGAGAAATACCGAGCTCGCGGCAGGAAGCCATGGAAGCTGATGCTGCAGATCATCAAGATCGCCATCATCACCATCCAGctgGTGTCGTTTGGCCTGAGCAATCAGATGGTGGTGACGTTTAAGGAGGAGAACCTGATGACCTTCAAGCACCTGTTCCTGAAGGACTACGCCGATCAAACCGCTAAAGCCTACGCCGTGTACACTCAACACGAGgtctacacacacctgtcctaCATCGTACagcagTTCCTGAGTTTACAGAACATTACGGTGGGGAACCACGCATACGAGAAGAACGATCATCTCTACACTCCTCTACTCATCTGCCAGCAGTTCTACCACAACGGCAGCATCTCCCCGGGCAACGAGACCTTCGAGATCGACGCCAAGGTGGAGGAAGAGTGCCTCGAGATTTATCCTGCCCAGGCGTTATCCACTGCGGAAGACACACACCTGTCCAACTTCACGCTGCAGTTCAAACGGTTGCTGGAGGTGAACGTGTACTTCACTCTGAAGGCCATTAACCTGCAGACGGTGCAGCACCACGAGCTTCCTGACTGCTACGACTTCAGCATCATGATCACCTTCGACAACCGCGCCCACAGCGGCCGGATCAGAGTGGACCTGGACAACGAAGTGGACATCAACGAGTGCCGAGACTGGAAAGTCACGGGAGCGTCTCCTAAGAACATCTACTACACGGTGCTGTTCGACGTGGTGATCATTCTCACGTGTCTGGCGTCTCTGGTCCTCTGCACGCGCTCCGTGAGCACCGGAGTTCAGCTGCAGCTTGAGTACACCAGCTTCTTCCTGAAGCATTATGGGAAGCGAGTGTGTTGGTCTGACCGGATGGAGTTTATTAACGGCTGGTacatcctcatcatcattaGCGACGTCCTCACCATCACCGGCTCGCTGCTCAAAATCGCCATCCAGCTCAAGGCTTTTACGAGTTATGACATCTGCAGCATCCTCCTGGGCACCGGCACCATGCTCGTGTGGATCGGCGTGCTGCGCTACATGGGCTACTTCAAGAAATACAACATCCTGATCATCACCCTGAGAGCGGCGTTCCCCAACGTGATCCGTTTCTGCTGCTGCGCCGCCATGATCTACCTCGGCTACTGCTTCTGCGGCTGGATCGTACTCGGACCCTACCACGAGAAGTTCCGTACCCTGAACACGGTGTCCGAGTGTCTGTTCTCCCTGATTAACGGAGACGACATGTTCGCCACCTTTAAGAACATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGTCGTGGTTACCTGTACACCTTCGTCTCGCTCTTCATCTACATGGTGCTCAGCCTCTTCATCACCCTAATCACCGACACCTACGAGACCATCAAGcagcagcagttggACGGAAATCCCGTGTCTGAGCTCCAGGCCTTTATATCCGAGTGTAAAGATCATCCGAACTCGGGCTGTTACCGTGTGGAGGACCGATCCTCTCCCTGCCTCTTCTGCTGCACTCGGAGgCTCAGCGACCTGCACGAGAGACTGGAGTGTTAAACACGGGACGCTGAAGTCACACCGAAAATAATTCATCATTACAGTTTAATCTACTTACATCTAAACACAAAAAGGCTATGAAGGAGCATTGGCAGTGTTTCCCACTCGCTTTATTTCTGTAGGTCAGACTGAACACCTAACAGCACTTGCACTTGCAGCTCACAGTTGGGAATTTATTCAGCGATGcacaaaactataaataaatatttgttacatcataatttaattttttttgcggCCATGCAGTCTGCTTTATGCACTTGATACTTGGTTTTTGAATTTCCACCTGAAGATTTcttgctataaataaaataaaatggtagatttctgaaa
>XM_026921141.2
TTTATCTGTCAGCCGGTGAAGTCGAGCGGCTAGTGATTCGGCGCTGATTTCGTGATTTTTGTGAGATTTTGGAGTGGAATTGAGTCGAGTTAAGTGTTGAGTGACAGATGAGGATGTCTACTTCAGAGCTGTGGGACTTTTCCGCTCTTTAATTTCGTCTTGAGTGAGTTAGAGGAGTTTTTCTGGGAGAAGcgtcgctgctgctgctgctgctgctgctgtggtgctcagctgtgaatgagctgcagacATGGATGACTTGGGAGCTTCCTATCTGGCCTTTAACGATTTTAACAGCAATGGCGGCTCGCTGTGGGCGGAGTCACTGGCCCATCAGGAGCGTCAGGAGGTGGAGAGCTTCAGGAGGAAACTCAAATACTTCTTCATGAACCCCTGCGAGAAATACCGAGCTCGCGGCAGGAAGCCATGGAAGCTGATGCTGCAGATCATCAAGATCGCCATCATCACCATCCAGctgGTGTCGTTTGGCCTGAGCAATCAGATGGTGGTGACGTTTAAGGAGGAGAACCTGATGACCTTCAAGCACCTGTTCCTGAAGGACTACGCCGATCAAACCGCTAAAGCCTACGCCGTGTACACTCAACACGAGgtctacacacacctgtcctaCATCGTACagcagTTCCTGAGTTTACAGAACATTACGGTGGGGAACCACGCATACGAGAAGAACGATCATCTCTACACTCCTCTACTCATCTGCCAGCAGTTCTACCACAACGGCAGCATCTCCCCGGGCAACGAGACCTTCGAGATCGACGCCAAGGTGGAGGAAGAGTGCCTCGAGATTTATCCTGCCCAGGCGTTATCCACTGCGGAAGACACACACCTGTCCAACTTCACGCTGCAGTTCAAACGGTTGCTGGAGGTGAACGTGTACTTCACTCTGAAGGCCATTAACCTGCAGACGGTGCAGCACCACGAGCTTCCTGACTGCTACGACTTCAGCATCATGATCACCTTCGACAACCGCGCCCACAGCGGCCGGATCAGAGTGGACCTGGACAACGAAGTGGACATCAACGAGTGCCGAGACTGGAAAGTCACGGGAGCGTCTCCTAAGAACATCTACTACACGGTGCTGTTCGACGTGGTGATCATTCTCACGTGTCTGGCGTCTCTGGTCCTCTGCACGCGCTCCGTGAGCACCGGAGTTCAGCTGCAGCTTGAGTACACCAGCTTCTTCCTGAAGCATTATGGGAAGCGAGTGTGTTGGTCTGACCGGATGGAGTTTATTAACGGCTGGTacatcctcatcatcattaGCGACGTCCTCACCATCACCGGCTCGCTGCTCAAAATCGCCATCCAGCTCAAGGCTTTTACGAGTTATGACATCTGCAGCATCCTCCTGGGCACCGGCACCATGCTCGTGTGGATCGGCGTGCTGCGCTACATGGGCTACTTCAAGAAATACAACATCCTGATCATCACCCTGAGAGCGGCGTTCCCCAACGTGATCCGTTTCTGCTGCTGCGCCGCCATGATCTACCTCGGCTACTGCTTCTGCGGCTGGATCGTACTCGGACCCTACCACGAGAAGTTCCGTACCCTGAACACGGTGTCCGAGTGTCTGTTCTCCCTGATTAACGGAGACGACATGTTCGCCACCTTTAAGAACATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGTCGTGGTTACCTGTACACCTTCGTCTCGCTCTTCATCTACATGGTGCTCAGCCTCTTCATCACCCTAATCACCGACACCTACGAGACCATCAAGcagcagcagttggACGGAAATCCCGTGTCTGAGCTCCAGGCCTTTATATCCGAGTGTAAAGATCATCCGAACTCGGGCTGTTACCGTGTGGAGGACCGATCCTCTCCCTGCCTCTTCTGCTGCACTCGGAGGTGA
>XM_034311922.1
GTTTATCTGTCAGCCGGTGAAGTCGAGCGGCTAGTGATTCGGCGCTGATTTCGTGATTTTTGTGAGATTTTGGAGTGGAATTGAGTCGAGTTAAGTGTTGAGTGACAGATGAGGATGTCTACTTCAGAGCTGTGGGACTTTTCCGCTCTTTAATTTCGTCTTGAGTGAGTTAGAGGAGTTTTTCTGGGAGAAGcgtcgctgctgctgctgctgctgctgctgtggtgctcagctgtgaatgagctgcagacATGGATGACTTGGGAGCTTCCTATCTGGCCTTTAACGATTTTAACAGCAATGGCGGCTCGCTGTGGGCGGAGTCACTGGCCCATCAGGAGCGTCAGGAGGTGGAGAGCTTCAGGAGGAAACTCAAATACTTCTTCATGAACCCCTGCGAGAAATACCGAGCTCGCGGCAGGAAGCCATGGAAGCTGATGCTGCAGATCATCAAGATCGCCATCATCACCATCCAGctgGTGTCGTTTGGCCTGAGCAATCAGATGGTGGTGACGTTTAAGGAGGAGAACCTGATGACCTTCAAGCACCTGTTCCTGAAGGACTACGCCGATCAAACCGCTAAAGCCTACGCCGTGTACACTCAACACGAGgtctacacacacctgtcctaCATCGTACagcagTTCCTGAGTTTACAGAACATTACGGTGGGGAACCACGCATACGAGAAGAACGATCATCTCTACACTCCTCTACTCATCTGCCAGCAGTTCTACCACAACGGCAGCATCTCCCCGGGCAACGAGACCTTCGAGATCGACGCCAAGGTGGAGGAAGAGTGCCTCGAGATTTATCCTGCCCAGGCGTTATCCACTGCGGAAGACACACACCTGTCCAACTTCACGCTGCAGTTCAAACGGTTGCTGGAGGTGAACGTGTACTTCACTCTGAAGGCCATTAACCTGCAGACGGTGCAGCACCACGAGCTTCCTGACTGCTACGACTTCAGCATCATGATCACCTTCGACAACCGCGCCCACAGCGGCCGGATCAGAGTGGACCTGGACAACGAAGTGGACATCAACGAGTGCCGAGACTGGAAAGTCACGGGAGCGTCTCCTAAGAACATCTACTACACGGTGCTGTTCGACGTGGTGATCATTCTCACGTGTCTGGCGTCTCTGGTCCTCTGCACGCGCTCCGTGAGCACCGGAGTTCAGCTGCAGCTTGAGTACACCAGCTTCTTCCTGAAGCATTATGGGAAGCGAGTGTGTTGGTCTGACCGGATGGAGTTTATTAACGGCTGGTacatcctcatcatcattaGCGACGTCCTCACCATCACCGGCTCGCTGCTCAAAATCGCCATCCAGCTCAAGGCTTTTACGAGTTATGACATCTGCAGCATCCTCCTGGGCACCGGCACCATGCTCGTGTGGATCGGCGTGCTGCGCTACATGGGCTACTTCAAGAAATACAACATCCTGATCATCACCCTGAGAGCGGCGTTCCCCAACGTGATCCGTTTCTGCTGCTGCGCCGCCATGATCTACCTCGGCTACTGCTTCTGCGGCTGGATCGTACTCGGACCCTACCACGAGAAGTTCCGTACCCTGAACACGGTGTCCGAGTGTCTGTTCTCCCTGATTAACGGAGACGACATGTTCGCCACCTTTAAGAACATGCAGCAGAAGAGTTACCTGGTGTGGCTGTTCAGTCGTGGTTACCTGTACACCTTCGTCTCGCTCTTCATCTACATGGTGCTCAGCCTCTTCATCACCCTAATCACCGACACCTACGAGACCATCAAGcagcagttggACGGAAATCCCGTGTCTGAGCTCCAGGCCTTTATATCCGAGTGTAAAGATCATCCGAACTCGGGCTGTTACCGTGTGGAGGACCGATCCTCTCCCTGCCTCTTCTGCTGCACTCGGAGgCTCAGCGACCTGCACGAGAGACTGGAGTGTTAAACACGGGACGCTGAAGTCACACCGAAAATAATTCATCATTACAGTTTAATCTACTTACATCTAAACACAAAAAGGCTATGAAGGAGCATTGGCAGTGTTTCCCACTCGCTTTATTTCTGTAGGTCAGACTGAACACCTAACAGCACTTGCACTTGCAGCTCACAGTTGGGAATTTATTCAGCGATGcacaaaactataaataaatatttgttacatcataatttaattttttttgcggCCATGCAGTCTGCTTTATGCACTTGATACTTGGTTTTTGAATTTCCACCTGAAGATTTcttgctataaataaaataaaatggtagatttctgaaa

Function

symbol description
mcoln3 Predicted to enable NAADP-sensitive calcium-release channel activity. Predicted to be involved in calcium ion transmembrane transport. Predicted to act upstream of or within inner ear auditory receptor cell differentiation; locomotory behavior; and sensory perception of sound. Predicted to be located in cytoplasm. Predicted to be active in lysosomal membrane and plasma membrane.

NR:

description
mucolipin-3-like isoform X1

GO: NA

KEGG:

id description
K04994 MCOLN3, TRPML3; mucolipin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026921140.2 True 2269 mRNA 0.51 14 23951661 23967886
XM_026921141.2 False 1906 mRNA 0.53 13 23951661 23966684
XM_034311922.1 False 2267 mRNA 0.51 14 23951660 23967886

Neighbor

gene id symbol gene type direction distance location
syde2 syde2 coding upstream 29684 23888706 ~ 23921976 (+)
c16h1orf52 c15h1orf52 coding upstream 76273 23872817 ~ 23875387 (+)
ddah1 ddah1,LOC107570409,LOC106584046 coding upstream 87222 23809480 ~ 23864438 (+)
znhit6 znhit6 coding upstream 153631 23769235 ~ 23798029 (+)
LOC113530587 col24a1,LOC107660294,LOC107709510,LOC107655744,LOC107570408 coding upstream 188123 23672046 ~ 23763537 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding downstream 80130 24048016 ~ 24055524 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding downstream 123236 24091122 ~ 24131107 (+)
LOC113530931 LOC108275754 coding downstream 198834 24166720 ~ 24188371 (+)
cltrn tmem27 coding downstream 331710 24299596 ~ 24306661 (+)
mdp1 mdp1 coding downstream 344340 24312226 ~ 24315467 (+)
G260232 NA non-coding upstream 33269 23917881 ~ 23918391 (+)
G260217 NA non-coding upstream 82104 23867651 ~ 23869556 (+)
G260223 NA non-coding upstream 89090 23861642 ~ 23862570 (+)
G260222 NA non-coding upstream 124029 23826892 ~ 23827631 (+)
G260074 NA non-coding upstream 389276 23527428 ~ 23562384 (+)
LOC117599261 NA non-coding downstream 34663 24002549 ~ 24003381 (+)
LOC117599260 NA non-coding downstream 42789 24010675 ~ 24013004 (+)
G260410 NA non-coding downstream 55490 24023376 ~ 24030335 (+)
G260430 NA non-coding downstream 163832 24131718 ~ 24131958 (+)
G260431 NA non-coding downstream 167908 24135794 ~ 24140619 (+)
G259993 NA other upstream 562346 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 568007 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1271118 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 2409233 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2712661 21228320 ~ 21238999 (+)
G260415 NA other downstream 64341 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 300691 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 432698 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 657051 24624937 ~ 24636129 (+)

Expression


Co-expression Network