G260074


Basic Information

Item Value
gene id G260074
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23527428 ~ 23562384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU307893
aacacacacacacattacacacacacacacacacacattagcctAGCTACCTTTGATGATGAATTTGTCGCATGCACGGCGGATATCACTTCTCACTCTTCTGCTGCAGTTTGGGAAAAACTCTCCCTCCACCAGATATTTCTGCAGCATGTGATAAAACTCCAGCGTTTTCATCTTCTGCCTACCCGATCCGCGTCTCCTGCTCGATTTGCGCCGCGCTGTCGTGTCCGTACTGCGCATGCGCCAACTGTTCAATCCGCCGCGCATGCGCAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU307893 True 275 lncRNA 0.51 2 23527428 23562384

Neighbor

gene id symbol gene type direction distance location
slc10a7 slc10a7,LOC107725722,LOC107752196,LOC107694411 coding upstream 5613 23510603 ~ 23521815 (+)
LOC113530383 NA coding upstream 17775 23507539 ~ 23509653 (+)
LOC117599230 NA coding upstream 20450 23505191 ~ 23506978 (+)
LOC113530973 NA coding upstream 33038 23488510 ~ 23494390 (+)
LOC113530553 NA coding upstream 40904 23483725 ~ 23486524 (+)
anapc10 anapc10,LOC107550153,LOC107564421 coding downstream 1161 23563545 ~ 23568673 (+)
LOC113530971 NA coding downstream 9813 23572197 ~ 23583979 (+)
LOC113530551 NA coding downstream 22395 23584779 ~ 23604485 (+)
rnf150b rnf150a,LOC108275805,LOC107694428,LOC107653218,LOC107564413,LOC107725723,LOC108441535 coding downstream 42720 23605104 ~ 23617167 (+)
si:ch211-149b19.2 LOC108275803 coding downstream 68209 23630593 ~ 23634770 (+)
G260011 NA non-coding upstream 52984 23473913 ~ 23474444 (+)
G260009 NA non-coding upstream 58371 23468826 ~ 23469057 (+)
G259978 NA non-coding upstream 165138 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 178491 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 218836 23307755 ~ 23308592 (+)
G260222 NA non-coding downstream 264508 23826892 ~ 23827631 (+)
G260223 NA non-coding downstream 299258 23861642 ~ 23862570 (+)
G260217 NA non-coding downstream 305267 23867651 ~ 23869556 (+)
G260232 NA non-coding downstream 355497 23917881 ~ 23918391 (+)
LOC117599261 NA non-coding downstream 440165 24002549 ~ 24003381 (+)
G259993 NA other upstream 138114 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 143775 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 846886 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1985001 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2288429 21228320 ~ 21238999 (+)
G260415 NA other downstream 469843 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 706193 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 838200 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1062553 24624937 ~ 24636129 (+)

Expression


Co-expression Network