Gene
RNA
| Item | Value |
|---|---|
| gene id | G260592 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047610.1 |
| NCBI id | CM018556.1 |
| chromosome length | 25111544 |
| location | 24405044 ~ 24430691 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU308545 | True | 899 | lncRNA | 0.39 | 3 | 24405044 | 24430691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mdp1 | mdp1 | coding | upstream | 89577 | 24312226 ~ 24315467 (+) |
| cltrn | tmem27 | coding | upstream | 98383 | 24299596 ~ 24306661 (+) |
| LOC113530931 | LOC108275754 | coding | upstream | 216673 | 24166720 ~ 24188371 (+) |
| slc1a7b | slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 | coding | upstream | 273937 | 24091122 ~ 24131107 (+) |
| gpx7 | gpx7,LOC107687580,LOC107562253,LOC102781798 | coding | upstream | 349520 | 24048016 ~ 24055524 (+) |
| LOC113530532 | LOC108275719 | coding | downstream | 90188 | 24520879 ~ 24528915 (+) |
| LOC117599218 | LOC108275604,LOC102207396 | coding | downstream | 168467 | 24599158 ~ 24613089 (+) |
| LOC113530697 | NA | coding | downstream | 187929 | 24618620 ~ 24623805 (+) |
| LOC113530267 | LOC108275728 | coding | downstream | 249929 | 24680620 ~ 24689895 (+) |
| aimp1b | LOC108275725 | coding | downstream | 262340 | 24693031 ~ 24698433 (+) |
| LOC113530917 | NA | non-coding | upstream | 53572 | 24348977 ~ 24351472 (+) |
| G260441 | NA | non-coding | upstream | 234015 | 24170370 ~ 24171029 (+) |
| G260409 | NA | non-coding | upstream | 243404 | 24158866 ~ 24161640 (+) |
| G260434 | NA | non-coding | upstream | 258705 | 24145990 ~ 24146339 (+) |
| G260431 | NA | non-coding | upstream | 264425 | 24135794 ~ 24140619 (+) |
| G260632 | LOC108275555 | non-coding | downstream | 46875 | 24477566 ~ 24479800 (+) |
| LOC117599259 | NA | non-coding | downstream | 92567 | 24523258 ~ 24528915 (+) |
| G260623 | tcp1 | non-coding | downstream | 97561 | 24528252 ~ 24604059 (+) |
| G260677 | NA | non-coding | downstream | 185477 | 24616168 ~ 24617217 (+) |
| LOC113530849 | NA | non-coding | downstream | 274596 | 24705287 ~ 24706115 (+) |
| G260483 | LOC108275756 | other | upstream | 135777 | 24268577 ~ 24269267 (+) |
| G260415 | NA | other | upstream | 372320 | 24032227 ~ 24032724 (+) |
| G259993 | NA | other | upstream | 1015730 | 23387538 ~ 23389314 (+) |
| LOC117599309 | NA | other | upstream | 1021391 | 23371744 ~ 23383653 (+) |
| LOC113530514 | LOC108275916 | other | upstream | 1724502 | 22671398 ~ 22680542 (+) |
| ddx58 | ddx58 | other | downstream | 194246 | 24624937 ~ 24636129 (+) |
