rnf146 (rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496)


Basic Information

Item Value
gene id rnf146
gene name rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24400584 ~ 24453538 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU308598
tgtttgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgctatGTCTCATATCTcactcgtttttttttaaacgtatgTTACTGTGATGCGTTTTGAAGGAAGTGCCCGTGTCCCAGGCTGAGACGCTATGAactctgggaaatggagttttaTTTGAGGATTTTATTGTAGTTGTAGTCTTTCTTCAACATCTGGTTCTGAcaaatttaattattgtttttttccccccagtccagttgtttgggatttttttttgtcatcaaacaaaaagaaatgataatAGCTATGATAACTTcttttgctgtattttgttttaatggtggtgtgttttcttttttgttactAAGTTGTTTGAATTAA
>XM_026921357.2
CATGAGGAACCGATTCTTTGGTGAATCACACATCAGTAATTTCAGTCAGTGGGACTGAAAACATCGCAGGTTTCCTTTAAACAGCTTCTACACAGttctgagttttaaaaaaatgaaaagtcgATCTGTTCACAGCAGatgagtgaaaaataaatcttgaaAGTCTCTGAGGAATTTTGACAGAATGGCTAGCTGTGGAGAGGTCGATCACTCCATGGACGCGCTGGCCTCGGGGAAAAAAGTGGGCGGGGTAAGAGACGGCAGCGGAAGCCCCTCCCCTTCTCCTCCCCCTTCACTTCCTGTACCGGAGTGCGCTATATGCCTGCAGACTTGCGTCCACCCAGTGCGCCTCCCCTGCGGCCACGTCTTCTGCTTCCTGTGCGTGAAGGGCGCGTCCTGGCACAGCAAGCGCTGCGCCCTCTGCAGACAGGAAGTGCCCGAGGACTTCCTGGACCGTCCCACGCTGCTTTCTCCAGAGGAGCTGAAGGCCACGGCGACGGGAGGGCGGAGCTTAGGCGGCCACGCCTGGTACTACGAAGGGCGCAACGGTTGGTGGCAGTATGACGAGCGCACGAGCCGCGAGCTGGAGGAGGCTTACCGCGAGGGGAAGAAGAGCGCCGAGATGCTCATCGCCGGATTCCTGTACGTGGCCGACCTGGAGAACATGGTGCAGTACAGACGCAACGAGCACGGACGCCGCAGGAGGATGAAGCGTGACGCCGTGGACGTTCCTAAAAAGGGCGTGGCTGGACTAAGGCTGGATCCAGAACCCGCAACAGGATCCGGATCCAATTCCGTTCCCGGATCTGGATCAGTTTCTCCGGCATTTCCAGGCCCCGTACCCGCGGATTCGGATGGAGGGGTAACGGAGAGcgatgtcagagagagagacgtccggacagagagacagctgagagagagacagagggacagagttTCTCCAGGCTTCGCTGATCCTACAGCCGCCGATCTGGCACTGAATTCAGAAGCCGCGACGTCGGAGAGGGAGAACTCGGCAGACGGAGCCGATATAAACGGAGCGATTCGCTCTCAGGCTGCGTTTGCCCCGCCCCCGATCCGCCCTCCCATCATGCTGGGCGGCGACCGTGACCTTCAGCTTAATCCTCAACTCGTCCAGGCGTTCGCGCAGCTCCACATCGGACGAGCCGCACACGAAGAGGACGAGGAACAGGAAGTGGACGACGAAGACGACGGAGATAACGAAGACGATTCGGCTGCTGCACCCGATCCGTCCGGTTACGAATCGGAAACAGGAACgagtgaagatgaagatgaggaaGGAGAAGACGACGCGGAAGGCTTGAGGCACAGACTGCAGAGGATGGACGGCGGAGTTCGGTCCCGCAGTCCTGACGGCCAGTGCACGGTGACGGAGGTGTAGCGGTCGGAGATGCGAAACGTGAACATAGCTACATCTGTAAACGTGGACGGTTTAGAGCTTGAGAAGCAGGACGTGCACTTCTGTCTTAAACGTCGCGTTCTTTACGAACCTTTGGCTGTATCCCAAACTCTAGCATGTGGAAAGAACGTCCGGTTAGTTTTGGTGTATGAGGATACTGCGTCACAAAGACGGAAGAAGAAACTTTGTAATTGAAAATTcaagccagctagctagctaatcggCTAATTAGAAATCGCCCGCCTGCCTGTAGAGTCCACACGGAAGCATAACGCTAAAACTACGACTTCTAGCTATAACTTTATGCGTTATTACGATATACGTTTAATTCGATGTGAACTCGCTCGCTGCAGTTTCTCAGTGTTCAAACTGCTTCCGGTGCGTCGCGAGTAATACTTACGTTTGCTGAGCCACCGAGAACAACACACGAAACATCACGTAACCGCTATCACGAAATAAAAACTCTGTATTCTAgcatttctaaataataataataataataataaacagccaACACTCTTGTGAGAACACTAACGACACGTCTAGAGTTTGGGACGGAGCTTTTGTGTGTTATTCTGATTTTTACTGACGTACATCGCAGCACCTCCCGGATCTTTTTTTCGTATCTATGTACGAGGTTATGTAGATACGAGATATAAACGTCTGTACGTACGAAGCGGAGACGTAAAGTGCGAATCGCTGACTGCGTTCTCCATGAGCTGAGACACGGAGGTGTTGCACTGCTGAATATCCGAACAAGCAAAAAACATAATCGTCTAATAAATTAATGTTCATTCAGCCAGAGCGGGAGGAAGACGAGGACGAAGAGctttcagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgatgcattGTGTGAatgtcttttgttctttcttcctCCTTTCATCCTGTCTTTCTTTAGCATTTGTATGAGTAATGCAGACTCaactttccttcctttctctctcccctctctctctctcctctctctctctctctctctcctctctctctctctctctctctctctctctctctctctctctcgcaaaGCTGAGCTCCAAAAATTAGTCCTTtgagtgtctgtctgtctctttaatCTGTCTTTTGCCTCTCTTTgtaaatctgtctctctgtctttctctttgtttgtctcatctcatctttctgtctctgtctcttttggagtctttctctctctctctctctctctctctctctctctttctgtcagtctgtcCTCCTCTCTGTTCTCTTCAGCTCTATATTTATGTCACTGGCGCGTCAGTAAAACATTTCACTCAGTAAAACATTTCACTCGGATATTATTCACACCTTGTCATGTTTCATAATGTGGAAGAAAAACGAATACATCATTAGAAGGTCGTTCGTCTGAGATCCGTCTTACTCACACTCACGTCTCTCTCTAACAGGGCAGAACTTCATCAGATCACACTGCAGTAGAATCATGACTCCAGatagtagtagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgctatGTCTCATATCTcactcgtttttttttaaacgtatgTTACTGTGATGCGTTTTGAAGGAAGTGCCCGTGTCCCAGGCTGAGACGCTATGAactctgggaaatggagttttaTTTGAGGATTTTATTGTAGTTGTAGTCTTTCTTCAACATCTGGTTCTGAcaaatttaattattgtttttttccccccagtccagttgtttgggatttttttttgtcatcaaacaaaaagaaatgataatAGCTATGATAACTTcttttgctgtattttgttttaatggtggtgtgttttcttttttgttactAAGTTGTTTGAATTAATAAAGTGTTGTCTATTATTTGTCTGAAA
>XM_034311962.1
AGAAATATCAGACTTAATGTGATGGTTTGTAGTGAAACATAGCAAACTGTGGACAGTTTAGGACTtcagtgtgtaaaatgtttCACTGATAAATAGTTTAATGCAAAAATTAGATATATAGCAGCTGAAATATCTTCAACAAAGACTTCTGTATTTGTCAGAAAATTCAAATTAACACAATGGCTAGCTGTGGAGAGGTCGATCACTCCATGGACGCGCTGGCCTCGGGGAAAAAAGTGGGCGGGGTAAGAGACGGCAGCGGAAGCCCCTCCCCTTCTCCTCCCCCTTCACTTCCTGTACCGGAGTGCGCTATATGCCTGCAGACTTGCGTCCACCCAGTGCGCCTCCCCTGCGGCCACGTCTTCTGCTTCCTGTGCGTGAAGGGCGCGTCCTGGCACAGCAAGCGCTGCGCCCTCTGCAGACAGGAAGTGCCCGAGGACTTCCTGGACCGTCCCACGCTGCTTTCTCCAGAGGAGCTGAAGGCCACGGCGACGGGAGGGCGGAGCTTAGGCGGCCACGCCTGGTACTACGAAGGGCGCAACGGTTGGTGGCAGTATGACGAGCGCACGAGCCGCGAGCTGGAGGAGGCTTACCGCGAGGGGAAGAAGAGCGCCGAGATGCTCATCGCCGGATTCCTGTACGTGGCCGACCTGGAGAACATGGTGCAGTACAGACGCAACGAGCACGGACGCCGCAGGAGGATGAAGCGTGACGCCGTGGACGTTCCTAAAAAGGGCGTGGCTGGACTAAGGCTGGATCCAGAACCCGCAACAGGATCCGGATCCAATTCCGTTCCCGGATCTGGATCAGTTTCTCCGGCATTTCCAGGCCCCGTACCCGCGGATTCGGATGGAGGGGTAACGGAGAGcgatgtcagagagagagacgtccggacagagagacagctgagagagagacagagggacagagttTCTCCAGGCTTCGCTGATCCTACAGCCGCCGATCTGGCACTGAATTCAGAAGCCGCGACGTCGGAGAGGGAGAACTCGGCAGACGGAGCCGATATAAACGGAGCGATTCGCTCTCAGGCTGCGTTTGCCCCGCCCCCGATCCGCCCTCCCATCATGCTGGGCGGCGACCGTGACCTTCAGCTTAATCCTCAACTCGTCCAGGCGTTCGCGCAGCTCCACATCGGACGAGCCGCACACGAAGAGGACGAGGAACAGGAAGTGGACGACGAAGACGACGGAGATAACGAAGACGATTCGGCTGCTGCACCCGATCCGTCCGGTTACGAATCGGAAACAGGAACgagtgaagatgaagatgaggaaGGAGAAGACGACGCGGAAGGCTTGAGGCACAGACTGCAGAGGATGGACGGCGGAGTTCGGTCCCGCAGTCCTGACGGCCAGTGCACGGTGACGGAGGTGTAGCGGTCGGAGATGCGAAACGTGAACATAGCTACATCTGTAAACGTGGACGGTTTAGAGCTTGAGAAGCAGGACGTGCACTTCTGTCTTAAACGTCGCGTTCTTTACGAACCTTTGGCTGTATCCCAAACTCTAGCATGTGGAAAGAACGTCCGGTTAGTTTTGGTGTATGAGGATACTGCGTCACAAAGACGGAAGAAGAAACTTTGTAATTGAAAATTcaagccagctagctagctaatcggCTAATTAGAAATCGCCCGCCTGCCTGTAGAGTCCACACGGAAGCATAACGCTAAAACTACGACTTCTAGCTATAACTTTATGCGTTATTACGATATACGTTTAATTCGATGTGAACTCGCTCGCTGCAGTTTCTCAGTGTTCAAACTGCTTCCGGTGCGTCGCGAGTAATACTTACGTTTGCTGAGCCACCGAGAACAACACACGAAACATCACGTAACCGCTATCACGAAATAAAAACTCTGTATTCTAgcatttctaaataataataataataataataaacagccaACACTCTTGTGAGAACACTAACGACACGTCTAGAGTTTGGGACGGAGCTTTTGTGTGTTATTCTGATTTTTACTGACGTACATCGCAGCACCTCCCGGATCTTTTTTTCGTATCTATGTACGAGGTTATGTAGATACGAGATATAAACGTCTGTACGTACGAAGCGGAGACGTAAAGTGCGAATCGCTGACTGCGTTCTCCATGAGCTGAGACACGGAGGTGTTGCACTGCTGAATATCCGAACAAGCAAAAAACATAATCGTCTAATAAATTAATGTTCATTCAGCCAGAGCGGGAGGAAGACGAGGACGAAGAGctttcagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgatgcattGTGTGAatgtcttttgttctttcttcctCCTTTCATCCTGTCTTTCTTTAGCATTTGTATGAGTAATGCAGACTCaactttccttcctttctctctcccctctctctctctcctctctctctctctctctctcctctctctctctctctctctctctctctctctctctctctctcgcaaaGCTGAGCTCCAAAAATTAGTCCTTtgagtgtctgtctgtctctttaatCTGTCTTTTGCCTCTCTTTgtaaatctgtctctctgtctttctctttgtttgtctcatctcatctttctgtctctgtctcttttggagtctttctctctctctctctctctctctctctctctctttctgtcagtctgtcCTCCTCTCTGTTCTCTTCAGCTCTATATTTATGTCACTGGCGCGTCAGTAAAACATTTCACTCAGTAAAACATTTCACTCGGATATTATTCACACCTTGTCATGTTTCATAATGTGGAAGAAAAACGAATACATCATTAGAAGGTCGTTCGTCTGAGATCCGTCTTACTCACACTCACGTCTCTCTCTAACAGGGCAGAACTTCATCAGATCACACTGCAGTAGAATCATGACTCCAGatagtagtagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgctatGTCTCATATCTcactcgtttttttttaaacgtatgTTACTGTGATGCGTTTTGAAGGAAGTGCCCGTGTCCCAGGCTGAGACGCTATGAactctgggaaatggagttttaTTTGAGGATTTTATTGTAGTTGTAGTCTTTCTTCAACATCTGGTTCTGAcaaatttaattattgtttttttccccccagtccagttgtttgggatttttttttgtcatcaaacaaaaagaaatgataatAGCTATGATAACTTcttttgctgtattttgttttaatggtggtgtgttttcttttttgttactAAGTTGTTTGAATTAATAAAGTGTTGTCTATTATTTGTCTGAAA

Function

symbol description
rnf146 Predicted to enable poly-ADP-D-ribose binding activity and ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of canonical Wnt signaling pathway; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in cytosol. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human RNF146 (ring finger protein 146).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase rnf146

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0072572 poly-ADP-D-ribose binding molecular_function

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

RNA

RNA id representative length rna type GC content exon number start site end site
TU308598 False 380 lncRNA 0.36 2 24400584 24453510
XM_026921357.2 True 3383 mRNA 0.49 2 24448602 24453538
XM_034311962.1 False 3378 mRNA 0.48 2 24449950 24453538

Neighbor

gene id symbol gene type direction distance location
mdp1 mdp1 coding upstream 85117 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 93923 24299596 ~ 24306661 (+)
LOC113530931 LOC108275754 coding upstream 212213 24166720 ~ 24188371 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 269477 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 345060 24048016 ~ 24055524 (+)
LOC113530532 LOC108275719 coding downstream 67341 24520879 ~ 24528915 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 145620 24599158 ~ 24613089 (+)
LOC113530697 NA coding downstream 165082 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 227082 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 239493 24693031 ~ 24698433 (+)
LOC113530917 NA non-coding upstream 49112 24348977 ~ 24351472 (+)
G260441 NA non-coding upstream 229555 24170370 ~ 24171029 (+)
G260409 NA non-coding upstream 238944 24158866 ~ 24161640 (+)
G260434 NA non-coding upstream 254245 24145990 ~ 24146339 (+)
G260431 NA non-coding upstream 259965 24135794 ~ 24140619 (+)
G260632 LOC108275555 non-coding downstream 24028 24477566 ~ 24479800 (+)
LOC117599259 NA non-coding downstream 69720 24523258 ~ 24528915 (+)
G260623 tcp1 non-coding downstream 74714 24528252 ~ 24604059 (+)
G260677 NA non-coding downstream 162630 24616168 ~ 24617217 (+)
LOC113530849 NA non-coding downstream 251749 24705287 ~ 24706115 (+)
G260483 LOC108275756 other upstream 131317 24268577 ~ 24269267 (+)
G260415 NA other upstream 367860 24032227 ~ 24032724 (+)
G259993 NA other upstream 1011270 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 1016931 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 1720042 22671398 ~ 22680542 (+)
ddx58 ddx58 other downstream 171399 24624937 ~ 24636129 (+)

Expression


Co-expression Network