LOC113530412


Basic Information

Item Value
gene id LOC113530412
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 23460595 ~ 23463606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920351.2
GCTTACTCACATTTGAACCCCATCTGCTTCAGCTTCACACCTCAACTTCtacaaaaaacaccaacaatgATGTCTCAAGTCACACTGCTGCTGATCTGCATGCTTTTCTCCAAAGCGCTGTCACTGAGTTGTTTTCAGTGTCTGCCACCAGGAACATGTGTACAGACAACCTGTTTAGATCAGTGTCTCACTACAACCGCTTCTGTGTACACaaATGGTACAAACGTGGGAGATTATAGTATAAAGACTTGCAGCCTGGCGGGACTGTGTACAAGCGGGAGCCTGAACGTGGGAACATTGAAATTGACTAGCAATGCCAAATGCTGCAGCACTGACCTCTGCAACAGTGAAACACTGCAAGcTCTTCCAGCGCAGGCTTCCAATGGGAGAATGTGTTACAGCTGTGACGGTACCAGTTGCTCGGGAACAGTGAGCTGTGAAGGAGTTGAAGATCGCTGCTTCACTGCATCAGttcaacAAGGGAACAGCAGCGTGTCTTTTAAAGGATGCGTGTCCAAGAATATCTGCGTTGCGGCTGCATCAACAAGCATTCTAGGATTCAGTCTGTCAAATGTGCAGTGCTGTGAGGGGAATCTGTGTAACGGTGCTGAGAGCTTcacactgagtttcctcctcATGATcatccctctgctctcctccatcctcttctACTGAGCTCAGAGCTGATGTAGCTCCTTTGTAGCTTTATCTAATGCGAAGTTAAAATGGAAGTAGAAGGGTAATAgtaatatatgtttatttttggtttttatgattttttacaCTTGTCTTAGTACTACCTGAGTTATACTTTTGTTACACTTTTGTTTGTAAATCAATTATGAAATCAAAAAGTCTTTAAACTTTAAGCAACAACATCCACATAAATGAACAAGTAAGAAATGGGATATTTCGTAATCAGGTctatagattttattatatttattaccaATTGCTATATTGTAAGGTAACCAAACTGCTTTGTCGTGTACATGcttattaaatatatgtaataaaggaacatatatatatatatatatatatatatatatatacccttGTGTGTCTGGAAGAAGTCAGGTCTTGCTTCTGTCACAtagcttaaaaaataaattcatgaagAAAGAAGTTAAACAGGATTAAACAACGAGCTGGTATTTGACCTGACAGGAAacagagtgaaataaaatgagtaaaCATGAGTTTGTCagatttacattaaacattgtCAGATAAAATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920351.2 True 1243 mRNA 0.39 5 23460595 23463606

Neighbor

gene id symbol gene type direction distance location
LOC113530919 NA coding upstream 9883 23447629 ~ 23450712 (+)
LOC113530555 NA coding upstream 16970 23440496 ~ 23443625 (+)
LOC113530918 NA coding upstream 26939 23422194 ~ 23433656 (+)
LOC113530872 NA coding upstream 39367 23414817 ~ 23421228 (+)
LOC113530556 NA coding upstream 49196 23407809 ~ 23411399 (+)
LOC113530554 NA coding downstream 13588 23477194 ~ 23480770 (+)
LOC113530553 NA coding downstream 20119 23483725 ~ 23486524 (+)
LOC113530973 NA coding downstream 24904 23488510 ~ 23494390 (+)
LOC117599230 NA coding downstream 41585 23505191 ~ 23506978 (+)
LOC113530383 NA coding downstream 43933 23507539 ~ 23509653 (+)
G259978 NA non-coding upstream 98305 23344862 ~ 23362290 (+)
G259968 NA non-coding upstream 111658 23332680 ~ 23348937 (+)
G259962 NA non-coding upstream 152003 23307755 ~ 23308592 (+)
G259690 ctnnbl1,LOC106942865 non-coding upstream 182686 23277434 ~ 23277909 (+)
G259540 LOC108276061 non-coding upstream 396026 23026446 ~ 23064569 (+)
G260009 NA non-coding downstream 5220 23468826 ~ 23469057 (+)
G260011 NA non-coding downstream 10307 23473913 ~ 23474444 (+)
G260074 NA non-coding downstream 63822 23527428 ~ 23562384 (+)
G260083 NA non-coding downstream 90990 23554596 ~ 23555077 (+)
G260222 NA non-coding downstream 363286 23826892 ~ 23827631 (+)
G259993 NA other upstream 71281 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 76942 23371744 ~ 23383653 (+)
LOC113530514 LOC108275916 other upstream 780053 22671398 ~ 22680542 (+)
LOC117599233 NA other upstream 1918168 21538045 ~ 21542427 (+)
si:ch73-290k24.5 LOC108275473 other upstream 2221596 21228320 ~ 21238999 (+)
G260415 NA other downstream 568621 24032227 ~ 24032724 (+)
G260483 LOC108275756 other downstream 804971 24268577 ~ 24269267 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other downstream 936978 24400584 ~ 24453538 (+)
ddx58 ddx58 other downstream 1161331 24624937 ~ 24636129 (+)

Expression


Co-expression Network