LOC117599259


Basic Information

Item Value
gene id LOC117599259
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 24523258 ~ 24528915 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004579724.1
CGCTGTGGTCACATTAGCAAGCGACAGACGATCCTTCGTTGTCTATTTGCGTCGCTACACGGAGCCACAGCAGCATTTgatttgagattttctcaattttatgcaaattaggtatgacgcATTAAAGCAATAAAACCAAATGATcggctcaaatgattcctcagaaAAATCCTACggcatttcttcagttccccttctcacaactttagttcctacctacaattagttcctgtttactTTTTGAcgcaaaaatggaagaagagACTTTAGGAGGCGGAGCATCGGGTGCATGAAAAACATCAAAacgtcatttctgaattcaaaCATTTCCGCTTCAGGTTGTCTTGTGCCAAATAATACCAACATGACACGGCTACAGCGTACAGTTTAGCTCATGTTTATAGAGAACAGGAAGTgccactgtgtcctaaaccacatcgaCGCACCTGAGGATAAAGATCTTTAGTAGAGATAGACAGAGTAGCTTCTTTGTTAACTATATCAGCATCTTAGCTTCAGTGctaaactaaagaagcaaatttcAGACACTAGACAGATCAGATcgactacatttggggtaaagggacattgtaaatgtttttttttttttaaatcaagagtgtCCTATGTAGCACACAGGTAAAGGGAACACAATGATTTTACACAAAGATTTCAGAATCAGTGGGTGCGTTCAGGTCACTTTGGTCGGAGCAAGATGGCGGCGTACCTTCTCTTCTCTAACtacaaaaaagataaaaaactaaagcaaaggttttttttaaactctacttctagaaaatgaaaaaaaaatcatttttaatcaatttatgaagccACTGTAAACTTTGTTACATATTATATCATAAGTGTACAACGCTATCGTACTTTGTGCAGGCAGTTAActtgttttattgttaaaaaaccTGACAAAGACAACattcaattttaattattaaacattcaATTGCAACAAATTTGCCGTCAGCTACAGACGCCGCTTCCATCGAGTCCACCACGTTTTCTTACTGACACGCCCCCAACAGAAACTCTGAGCtctaaagaaaagaaataaataaataaataaatccagagTTTCTTACTCGTAATTCGTTCGTAAATTTGATCTTTTCGACGTGACTCGAACGCACCAAGCTTCCTGTTTATTCGTGTGCTACATAGTGCCCTTGATTCTTCAGTGTAGGGTGTGTGAATTTGAACACAGCATGCATCATAGATCATCTACTTCCTGTCGAAAAAAGGAAGACcagttaacatttttttggtGCTAATCTCAAaactcattattattttaatgcatttaggaacaaaatgataattaacattttgtcaCTGTTCACAATATTATTACCAAGTTGCACAGAAGGGACAGTTCAGtccttcctcttttcttttcttgcttttaaatcttttttaatttcatagaATCCCATGGCTGGCTGGTGAaaagaattatgggattgccttCTCTGAAGATACACGTTACAGGACGTCATCTTTCAAATGAAACACTTTCTTTGTTCCTAGATCAGAAATGCTGCCTAAGTAGCACatattttgtttacagtaaCCATATTATCGTAAACGTATCGCGAGAAACGGTGCTAAAGAATAGATTTTAATTTCAGAgtagggcaaaaaaaaaaaagaaaaggtgcTTTTGGTTATTTTCAGCCTGGTATATAGCTTCTGTTTATTtagataaatgaatcatgtgaacaGACAAATCAGTGGTACacaccacttcctgtttatttctttaaacaGATCAGAGAAAGTGAATTACAGGTCATTACGTGTCATTTATCAGCAAGCCGTGTTGCTGCAGtagcaaaaacaaatacaagCTAAGTGCATGGGCTAAGCTACAACCGCTATAACATGGTGGGATGTTAATAAATAcggagtgggcggggctttacTCCTCCAGAGAGCCTGACTGGACGGCGTCCTGGTACGAAGGCCCGCCCTCTTTAGGCTCAGGGAAGAGTTTGATGAGGTCGTCGATGCGCAGGATGGTAATGGCCGCCTCGGTGGCGAATTTCAGACTCTTGGTTTTGACCATCGTGGGCTCGTACACACCCGCCTGCTTGTTATCCCTCGGCTTTCCGTTCACCAGATCCAAACCGATcctgcacacacaacacacacacacacacacacacacacacacacacacacacagagttctgtTTAGTTTTCACATTGCAGAAGTGTTTTCCAAACGCGTCACAAATGCACAGAGCCGTCCAAATTCTGTGTTAATCCAAACAAGgacaagaataaaacacacacacaaagttcacAATGACATTCTGGTATCTATTAAAAATGTTACTGGCTCGTTCCTGTA

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004579724.1 True 2371 lncRNA 0.39 2 24523258 24528915

Neighbor

gene id symbol gene type direction distance location
mdp1 mdp1 coding upstream 207791 24312226 ~ 24315467 (+)
cltrn tmem27 coding upstream 216597 24299596 ~ 24306661 (+)
LOC113530931 LOC108275754 coding upstream 334887 24166720 ~ 24188371 (+)
slc1a7b slc1a7b,LOC108440026,LOC107590475,LOC107692806,LOC108275751,LOC107687581,LOC107566235,LOC106560428 coding upstream 392151 24091122 ~ 24131107 (+)
gpx7 gpx7,LOC107687580,LOC107562253,LOC102781798 coding upstream 467734 24048016 ~ 24055524 (+)
LOC117599218 LOC108275604,LOC102207396 coding downstream 70243 24599158 ~ 24613089 (+)
LOC113530697 NA coding downstream 89705 24618620 ~ 24623805 (+)
LOC113530267 LOC108275728 coding downstream 151705 24680620 ~ 24689895 (+)
aimp1b LOC108275725 coding downstream 164116 24693031 ~ 24698433 (+)
sgms2b LOC108275722 coding downstream 186102 24715017 ~ 24725235 (+)
G260632 LOC108275555 non-coding upstream 43458 24477566 ~ 24479800 (+)
G260592 NA non-coding upstream 92567 24405044 ~ 24430691 (+)
LOC113530917 NA non-coding upstream 171786 24348977 ~ 24351472 (+)
G260441 NA non-coding upstream 352229 24170370 ~ 24171029 (+)
G260409 NA non-coding upstream 361618 24158866 ~ 24161640 (+)
G260677 NA non-coding downstream 87253 24616168 ~ 24617217 (+)
LOC113530849 NA non-coding downstream 176372 24705287 ~ 24706115 (+)
G260691 NA non-coding downstream 196932 24725847 ~ 24728397 (+)
LOC117599308 NA non-coding downstream 206808 24735723 ~ 24736373 (+)
G260697 NA non-coding downstream 216866 24745781 ~ 24751808 (+)
rnf146 rnf146,LOC107751835,LOC107599252,LOC107697902,LOC101069158,LOC107735261,LOC106571496 other upstream 69720 24400584 ~ 24453538 (+)
G260483 LOC108275756 other upstream 253991 24268577 ~ 24269267 (+)
G260415 NA other upstream 490534 24032227 ~ 24032724 (+)
G259993 NA other upstream 1133944 23387538 ~ 23389314 (+)
LOC117599309 NA other upstream 1139605 23371744 ~ 23383653 (+)
ddx58 ddx58 other downstream 96022 24624937 ~ 24636129 (+)

Expression


Co-expression Network