G272448


Basic Information

Item Value
gene id G272448
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20659603 ~ 20725194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322857
aaaaaagaaaaaagaaaaaaaaaaaaaaaaaaaaaagttgaatagtTATATGtacataattacattaaaaaaattttttgatcAACTATTTACAAAAAAGTGAGTATGTATACATGGCAACGATTCATCtgtttagaaaatgaaaaaggaaaacatatgaagaaaatataatttttttcctgctccCTTGGCATGTGAACCCTGGTTGAATTGTCAACGCATGCTGCAAGCTAAGAAACACAAGCCctagttagaaaaaaaaaaaaaaacaaaacaatattcaTCAACTTTTAGCCCCAGTGAAGATGGGTATCGGAGCTCTAAGGGTAGCGAGGCAGTGAGAGATGGCAAAATAGCCACTTCTCTTGTGTTCTTAGCTGCGAACGGCGGAAGCTACACTACAGCAGGCTCGGAGGGTCGGAGGCTTTAGAGAATGACGTAGGTGAAGAGAGCCATGATGGCGGCGCTGATGAGACCGGAGATGGGCACGGTCACGAACCAGGCCATGAAGATGTTGCGGAAAAGACGCCAATCCACGGCTTTCCGGGAACGCAGCCAACCCACGGCTACCACAGAacccacctgagagagagagagagagagagagagagagagagagagagagagagagataatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322857 True 638 lncRNA 0.42 2 20659603 20725194

Neighbor

gene id symbol gene type direction distance location
mpx LOC100335032 coding upstream 35662 20608815 ~ 20623941 (+)
sftpba LOC108276523 coding upstream 317220 20330486 ~ 20342383 (+)
hvcn1 hvcn1 coding upstream 346346 20303730 ~ 20313257 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 444849 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 504800 20125535 ~ 20154803 (+)
stard7 stard7,LOC107713384,LOC107687872 coding downstream 24979 20750173 ~ 20761668 (+)
smarcad1b LOC108277297 coding downstream 119131 20844325 ~ 20864250 (+)
ska1 ska1 coding downstream 139371 20864565 ~ 20870543 (+)
slc2a11l LOC108277148 coding downstream 146183 20871377 ~ 20880169 (+)
nt5c2l1 nt5dc4,LOC108435390 coding downstream 158833 20884027 ~ 20901267 (+)
G272426 NA non-coding upstream 95539 20562176 ~ 20564064 (+)
G272361 NA non-coding upstream 194557 20409723 ~ 20465046 (+)
G272360 NA non-coding upstream 211925 20442699 ~ 20447678 (+)
G272347 NA non-coding upstream 349727 20309591 ~ 20309876 (+)
G272305 NA non-coding upstream 419257 20239894 ~ 20240346 (+)
G272470 NA non-coding downstream 24167 20749361 ~ 20749647 (+)
G272770 NA non-coding downstream 202428 20927622 ~ 20931583 (+)
G272803 NA non-coding downstream 265149 20990343 ~ 20990551 (+)
G272940 NA non-coding downstream 754706 21479900 ~ 21492672 (+)
LOC113544190 NA non-coding downstream 762918 21488112 ~ 21492076 (+)
G272408 NA other upstream 116649 20540325 ~ 20542954 (+)
G272374 NA other upstream 230460 20423399 ~ 20429143 (+)
G272367 LOC108276637 other upstream 260656 20398280 ~ 20398947 (+)
gfra2b gfra2 other upstream 716098 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 810777 19848755 ~ 19848826 (+)
LOC113544125 LOC100304632 other downstream 634325 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 750893 21476087 ~ 21478880 (+)
LOC113544129 LOC108276555,LOC108427250,LOC107687808,LOC107720650,LOC107744134,LOC107678044,LOC563710,LOC107560524 other downstream 1197357 21922551 ~ 22033997 (+)
tmem230a tmem230,tmem230a,LOC103035677,LOC105888828,LOC106565272 other downstream 1644062 22369256 ~ 22374875 (+)
lrrtm4l1 lrrtm4l1,LOC108276585,LOC108433509,LOC107730422,LOC107553720 other downstream 1897234 22622428 ~ 22665570 (+)

Expression


Co-expression Network