Gene
RNA
| Item | Value |
|---|---|
| gene id | G272305 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047611.1 |
| NCBI id | CM018557.1 |
| chromosome length | 24879021 |
| location | 20239894 ~ 20240346 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU322678 | True | 416 | lncRNA | 0.36 | 2 | 20239894 | 20240346 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| mtrex | skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 | coding | upstream | 25140 | 20182654 ~ 20214754 (+) |
| pstpip2 | pstpip2,LOC107744171,LOC106568404 | coding | upstream | 85091 | 20125535 ~ 20154803 (+) |
| sub1a | sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 | coding | upstream | 116185 | 20117525 ~ 20123709 (+) |
| itga1 | itga1 | coding | upstream | 129593 | 20050618 ~ 20110301 (+) |
| LOC113543999 | LOC108277114 | coding | upstream | 216180 | 20018366 ~ 20023714 (+) |
| hvcn1 | hvcn1 | coding | downstream | 63384 | 20303730 ~ 20313257 (+) |
| sftpba | LOC108276523 | coding | downstream | 90140 | 20330486 ~ 20342383 (+) |
| mpx | LOC100335032 | coding | downstream | 368469 | 20608815 ~ 20623941 (+) |
| loxa | lox,LOC108277371,LOC107562574 | coding | downstream | 407461 | 20647807 ~ 20661095 (+) |
| snx24 | snx24 | coding | downstream | 422757 | 20663103 ~ 20670487 (+) |
| G272249 | plpp1 | non-coding | upstream | 13201 | 20223477 ~ 20226693 (+) |
| G272246 | NA | non-coding | upstream | 231697 | 19966127 ~ 20008197 (+) |
| LOC113544143 | NA | non-coding | upstream | 414662 | 19817178 ~ 19825232 (+) |
| G271923 | NA | non-coding | upstream | 754990 | 19482497 ~ 19484904 (+) |
| G271884 | NA | non-coding | upstream | 904014 | 19333846 ~ 19335880 (+) |
| G272347 | NA | non-coding | downstream | 69245 | 20309591 ~ 20309876 (+) |
| G272361 | NA | non-coding | downstream | 169377 | 20409723 ~ 20465046 (+) |
| G272360 | NA | non-coding | downstream | 202353 | 20442699 ~ 20447678 (+) |
| G272426 | NA | non-coding | downstream | 321830 | 20562176 ~ 20564064 (+) |
| G272427 | NA | non-coding | downstream | 324687 | 20565033 ~ 20660294 (+) |
| gfra2b | gfra2 | other | upstream | 296389 | 19853554 ~ 19943505 (+) |
| trnae-cuc_36 | NA | other | upstream | 391068 | 19848755 ~ 19848826 (+) |
| LOC117599326 | NA | other | upstream | 409626 | 19825962 ~ 19830268 (+) |
| G272180 | NA | other | upstream | 414662 | 19793912 ~ 19825232 (+) |
| LOC113543969 | NA | other | upstream | 453063 | 19782427 ~ 19786831 (+) |
| G272367 | LOC108276637 | other | downstream | 157934 | 20398280 ~ 20398947 (+) |
| G272374 | NA | other | downstream | 183053 | 20423399 ~ 20429143 (+) |
| G272408 | NA | other | downstream | 299979 | 20540325 ~ 20542954 (+) |
| LOC113544125 | LOC100304632 | other | downstream | 1119173 | 21359519 ~ 21361744 (+) |
| LOC113543995 | NA | other | downstream | 1235741 | 21476087 ~ 21478880 (+) |
