G272249 (plpp1)


Basic Information

Item Value
gene id G272249
gene name plpp1
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20223477 ~ 20226693 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU322615
atctGGGTTAAAGGCATTGTTAAACTAATTGTGATTTATTTGTGTTGATgttaagtgataagtgtgtgtaagtgttctGTAACTCCTGAACAGCGTGTCAATGTTgaaacaggtgtgttagagcagaaaaCACCAAGAGTCATTAGAAGCTTTTTATGACACTCGTGTTTACGCAGGCCTTCTGTTTGCTCAAACTGAATGACATCTGCAAGTCCTTTACAAACAAACTGGATTTAaatattgtgtctgtgtgtgttttagtaatTCACTAGAGACGTGAGAAGTTGGAACTacgtgtgcacacccttttccGGTGCCTAGGATCACCCACCTGGCTTCATTGACCATCCTCTGGTCCCCAGTGCAGGAGAAGTTCTCGATGTAAGCTCCACCCGAGCAGTTGATCAACTTCCAGTCAGGCTGACACACATACAGGAAGTGAGGTCGCAGCCGGCCGATTGAGTACTTGCCGATGTCGGTGAGGGACTGGCTCATGGCAGCACCGAACAGGAAGGTGCCGATTGCTTTATAGACACAGGCAACATAGCTGTTGCTGAAAGAGGACTTTGATTTGATACGTTTTAGATACACTGAAACGCACTCTCCAATGACC

Function

symbol description
plpp1 Enables ceramide-1-phosphate phosphatase activity; phosphatidate phosphatase activity; and sphingosine-1-phosphate phosphatase activity. Involved in several processes, including phospholipid dephosphorylation; phospholipid metabolic process; and sphingolipid metabolic process. Located in apical plasma membrane and membrane raft. Is integral component of plasma membrane.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322615 True 613 lncRNA 0.45 2 20223477 20226693

Neighbor

gene id symbol gene type direction distance location
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding upstream 8723 20182654 ~ 20214754 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding upstream 68674 20125535 ~ 20154803 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding upstream 99768 20117525 ~ 20123709 (+)
itga1 itga1 coding upstream 113176 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 199763 20018366 ~ 20023714 (+)
hvcn1 hvcn1 coding downstream 77037 20303730 ~ 20313257 (+)
sftpba LOC108276523 coding downstream 103793 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 382122 20608815 ~ 20623941 (+)
loxa lox,LOC108277371,LOC107562574 coding downstream 421114 20647807 ~ 20661095 (+)
snx24 snx24 coding downstream 436410 20663103 ~ 20670487 (+)
G272246 NA non-coding upstream 215280 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 398245 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 738573 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 887597 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 994054 19229061 ~ 19229423 (+)
G272305 NA non-coding downstream 13201 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 82898 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 183030 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 216006 20442699 ~ 20447678 (+)
G272426 NA non-coding downstream 335483 20562176 ~ 20564064 (+)
gfra2b gfra2 other upstream 279972 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 374651 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 393209 19825962 ~ 19830268 (+)
G272180 NA other upstream 398245 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 436646 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 171587 20398280 ~ 20398947 (+)
G272374 NA other downstream 196706 20423399 ~ 20429143 (+)
G272408 NA other downstream 313632 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1132826 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1249394 21476087 ~ 21478880 (+)

Expression


Co-expression Network