sub1a (sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117)


Basic Information

Item Value
gene id sub1a
gene name sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20117525 ~ 20123709 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942459.2
AGCCATTGAACAGCTCTGTTTGTGCAGAGTGAGGCTCGATCCCAAATCACTCCCTTGTGTCtgtataagtgcactacatagggtatgaaAACATGGCCATTATGTgctacgtagtgcactatgcTGTCTAACAGGCTGCCATTTTGGATTCATTTTGAGGCTTCGCAGGAACGCCGTTGTTTCCACCGTGAGATCTTCCGTTCAACACGACTGACTGTGTAACTCAGAATTTCTCTAACTGTCGCGATGCCTAAATCAAAGGAAGTGCTGTCTTCAACATCCAGCAGTGACTCAGACAGTGAAGCTGACACAAAGGCCAAACGGAAGAAGCAAATGATAGAGAAGCCAGCAAAGAAACAGAAGAGTGGGGAGTCATCAAAGTCCAGTGCATCTAAAAGCAGCGGAGGCAGCGCCAATAAAAAAGATAACATGTTCCAGATAGGGAAGATGAGGTATGTGAGTGTGCGAGAGTTCAAAGGGAAAGTCCTCATCGATATCCGCGAGTACTGGATGGACCAGGAAGGTGAAATGAAACCAGGAAAGAAAGGGATTTCTCTGAACCCGGAGCAGTGGACCCAGCTGAAAGAGCAGATCGACGATATCGACGATGCCTTGAGGAGAATATAAAAGCTGTTCACGAAGCGTTCACGAAGCCGCCTGCTTCTTTCCTCTGTCTGGATTTCACTTACATTTTATAAGTCAGATTAGCGATCTTGTAGTGTGAATTTTCTGATTAGGTTTTAGTGTAACGATTGTcgtatttttctatttctttgtgtttttattctacTGATAAAGCAACTGAGAGGCTACGCGTTGTCCTGGGTGCGTATGGGTTTAACTTGTGCTCATGTTTTTTTACAATAAAGATGATGGGAAAACGAAAGTA
>XM_026942461.2
TCTCAGATTTCGCGCTTGTGGTTTCATTTCGTGAAGTGATAAAGAACAGCAAAATCCTTCTTTCTGATTTCACCCGATTACTAAGTACAATAAGATAACTTttcaaactgaaaaaataacaaCCTGTAGCAGCAGAACAGGATGCCTAAATCAAAGGAAGTGCTGTCTTCAACATCCAGCAGTGACTCAGACAGTGAAGCTGACACAAAGGCCAAACGGAAGAAGCAAATGATAGAGAAGCCAGCAAAGAAACAGAAGAGTGGGGAGTCATCAAAGTCCAGTGCATCTAAAAGCAGCGGAGGCAGCGCCAATAAAAAAGATAACATGTTCCAGATAGGGAAGATGAGGTATGTGAGTGTGCGAGAGTTCAAAGGGAAAGTCCTCATCGATATCCGCGAGTACTGGATGGACCAGGAAGGTGAAATGAAACCAGGAAAGAAAGGGATTTCTCTGAACCCGGAGCAGTGGACCCAGCTGAAAGAGCAGATCGACGATATCGACGATGCCTTGAGGAGAATATAAAAGCTGTTCACGAAGCGTTCACGAAGCCGCCTGCTTCTTTCCTCTGTCTGGATTTCACTTACATTTTATAAGTCAGATTAGCGATCTTGTAGTGTGAATTTTCTGATTAGGTTTTAGTGTAACGATTGTcgtatttttctatttctttgtgtttttattctacTGATAAAGCAACTGAGAGGCTACGCGTTGTCCTGGGTGCGTATGGGTTTAACTTGTGCTCATGTTTTTTTACAATAAAGATGATGGGAAAACGAAAGTA

Function

symbol description
sub1a Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Orthologous to human SUB1 (SUB1 regulator of transcription).
sub1 Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex.

NR:

description
PREDICTED: activated RNA polymerase II transcriptional coactivator p15-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942459.2 True 889 mRNA 0.44 5 20117525 20123709
XM_026942461.2 False 784 mRNA 0.42 5 20118469 20123709

Neighbor

gene id symbol gene type direction distance location
itga1 itga1 coding upstream 7224 20050618 ~ 20110301 (+)
LOC113543999 LOC108277114 coding upstream 93811 20018366 ~ 20023714 (+)
LOC117595711 NA coding upstream 311730 19792704 ~ 19805795 (+)
LOC113544133 NA coding upstream 317007 19797773 ~ 19800518 (+)
LOC113543930 NA coding upstream 452201 19649463 ~ 19665324 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding downstream 1826 20125535 ~ 20154803 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding downstream 58945 20182654 ~ 20214754 (+)
hvcn1 hvcn1 coding downstream 180021 20303730 ~ 20313257 (+)
sftpba LOC108276523 coding downstream 206777 20330486 ~ 20342383 (+)
mpx LOC100335032 coding downstream 485106 20608815 ~ 20623941 (+)
G272246 NA non-coding upstream 109328 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 292293 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 632621 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 781645 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 888102 19229061 ~ 19229423 (+)
G272249 plpp1 non-coding downstream 99768 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 116185 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 185882 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 286014 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 318990 20442699 ~ 20447678 (+)
gfra2b gfra2 other upstream 174020 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 268699 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 287257 19825962 ~ 19830268 (+)
G272180 NA other upstream 292293 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 330694 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 274571 20398280 ~ 20398947 (+)
G272374 NA other downstream 299690 20423399 ~ 20429143 (+)
G272408 NA other downstream 416616 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1235810 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1352378 21476087 ~ 21478880 (+)

Expression


Co-expression Network