itga1 (itga1)


Basic Information

Item Value
gene id itga1
gene name itga1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 20050618 ~ 20110301 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026942659.2
tatacacacacgcgcgcgcgcgcacacagaAATCCTGCTGCTGCGCTCTGGCACGCTCTCGCGCTGTTTAACGGGAAACCGCTTTTAGGCGCGCGAGACGATACGAGAAGCACGAGACAGCTCGAAATGCGCTCTGGAGAGCAATGCTTAAGGCTCGCGGCACTGCTCGTGCTGCCGTCGTGTTTGTTGTCCTTTAACGTGGACGAGAAGAACGGGATGTCGTTCAGCGGGCCGATAGAAGACATGTTCGGTTACACCGTGCAGCAGTTCAACAACAGCGAGGGCAAATGGGTTCTGATTGGTTCTCCTCTGAAGGGACAGCCAGCCCAGCGGACCGGAGACGTCTACAAATGCCCTGTGGGTCAAGGCAGTTCTTCCAGCTGTATAAAATTAGACCTGCCTGCGCACACAACAATCCCAAATATACACGAAGTCAAAGAGAATATGACCATGGGCACGACGCTGGTGGCCAATCCAGATGGGAACGGATTTCTGGCGTGCGGTCCTCAGTACGGCTACATGTGTGGAAATCAGCAGTACATCACGGGCATCTGCTCCAACGTCAGCTCCTCCTTCCAGGTGCTCAACTCTATCGCCCCGACCATCcaagactgtaAGCAGGACATGGACATCGTCATCGTGCTGGATGGATCCAACAGCATTTTCCCTTGGAAACACATCACAGAATTTCTGGTCAAGTTTCTCAAAAAGATCGAAATCCCTCCAGCCAGGGTGGGCATTGTGTCATACGGAGATGACGTCGGCCATGTTTTTAACCTCAGCCAGTTCTCTAACACAGAAGACCTGGTTAAAAACGCAGCTGGGATCAAACAGAGACAGGGCTTAAAAACCATGACAGCGCTGGGAATCGATACAGCGAGGAAAGAGGCGTTCACTGTGGAGCGAGGAGCCAGACCAGGGGTCAAGAAAGTCATGGTGATTGTTACAGATGGAGAGTCACATGATGACTACAGACTGAAAGACGTCGTCAAAGACTGTGAGGAGGATGGGATCGAGAGGTTCGCCATCGCTGTTCTTGGTGATTATAACCgacaaaataaaagcaaagagGAAGTGAATAAATTCATTGAACAAATCAAGTCCATTGCGAGCAATAAAACAGACGATCATTTCTTCAACGTGGAAGACGAGCGGGCACTGATCACCATCGTCGATGCTCTAGGGAGCAAAATCTTTGCATTAGAAGCTACGTCTGGGAATCACACATCGTCTTTTGAAATGGAGATGTCCCAGTCAGGCTTCAGCGCTCACACGTCTAAAGCAGGTGTGATGCTGGGCGCAGTGGGAGCGTACGATTGGAACGGCACCGTCGTCATGCAGTCGGGTAATCAGTTTGTCGTGCCCAAAAACAACATCTTTCACAACCCTCTAGTGGAGAGGTACCAAGGCATGGCCGGATACGTGGGTTACGATGTGCAGTCGGCATACACACCCTCTGGAGTTCTCTACATCACCGGAGCTCCCAGATACAACCACACTGGCCGAGTTATTGTGTACCGCTTCAACGGGGAGAAGGTCACGGTCATGCAGAACCTCGAAGGAGAACAGatcGGCTCGTACTTTGGCAGCGTCCTCCAAACGCTGGACGTGGACGGAGACTCATACACAGACCTCCTGCTGGTGGGAGCTCCCATGTTCATGGGGCCTGAGAGAGACGAGCAGGGACAGGTCTACGTCTACAAGCTCAACACgGAGGGCATGTTTGAACACGAGATGACCCTGCGGCCGGTAAACCAGACATGCTGCACGGCGCACTCACACGCTTCCTGTACGAGTGTGAACAAGAACGAGCCATGCGGCGCTCGCTTCGGTACGTCCATCGCCGCTGTTCCTGACCTCAACCTGGATGGCTTTAACGACGTGGTGATCGGGTCGCCGCTGGAGAATGACCACCGGGGGGCAGTGTACATCTACCACGGCACTGAGCACACGATACGAGAAAAATATGTCCAGcgcaTAGCTGCTGGAGGTGATGGAGAGAAGATGAAGTTCTTCGGTCAGTCCATTCACGGAATCATGGACTTAAATGATGACGGGATTATAGATGTCACTATTGGAGGTATCGGAGGGGCTGCGCTGTActgGTCTCGGGATGTTGCCACTCTCCACGCCGAGATGAGCTTCGATCCCAACAAAATCAACGTGCAGCAGTCGACGTGTCAAATCCATGGCaagaacacagtgtgtgtgaagaccAAAGTGTGTTTCAGATACAAGGTCAAGTCCGAAAAAGAGACGAACCCAAAGGACCCAAAGACATtgatccACTACACTCTGACTCTTGATTCTCTGCGTGCCCTTGCGAGAGGAAGATTTAATGGTACAGATGAGAGAAAAATCCAGAAGAACGTCATCATCAGAGACTCTCTGTGCAATGAACTCTCCTTCTACATGTCGGACAAATTGGACTTTAGGGATCCTCTGATGGTGTCTCTGGACTTTGGGTTAGTGGATGTAGACAGGGGCCCAGTGCTGGATGGAACGTTACCAACATCACTCAATAAAACGcttGCTTTAGTAGACTGTGGAAATGATGAGAAGTGCATCGCTGATTTACACCTCCAAGCTACACCGAATGTCAGCAGCCTTGTCATTAAGGCCTACCATGAGAAGTTCCATGTCAGCATTAACATCATGAATAGTGGAGATAATGCGTACAACACCAAGGTCACACTCAGCACCACGGAAAACATCAACTACGTCAAAGTGGAGccTAAAGATAAAGACTGTGAGTTGAATCATACCAAGGCTGCGTGTGCAGTAGGATACCCTTTCCTCAAATCCAATGTATCGGAAGTCTTCAAGATTCTCTTTGAGGTCAATCCATCTCACATTCGCAAAGACATCATCATCAACGTCACTGCGACCACTGATAGCGAAGAGCGCAAGTCGGTGCTTCAGGACAACTTTGTACAGATCTCCATCCCGGTGATATATGAAGCCAGTCTGACCTTCACTGCgaaACTGAGCATGAAGGAGAATCATATAACCCTGAAGGAGGGAGAAACAGCACCGACTGTCATCAACGACACCAGCATGATTGGAGAAGAGATGAACATCAGTTATACGAttgagagagatgcagagacaCAGAGTCCTCCTCTCAGTCTGGCCATCACGTTTCCATACATGACACAGGCAAAGAACATCCTGCTCTATCTGACTCGCCTCACTTCCTCAGCCAATATCAAATGTAATGCGCTTGTTAACCCTGAGAACATCAGCCAGACAAAACAGTTCACCCATATAGCTAAAGCTGAGACACTCAGTGACTATCTGTTGagctgtaaaGAGAACGCGAACCCCTGCAGGTCGTTCAGCTGTGATATTCCTCCTGCCAGATTCAACCAGGTCAACGTCACCTTCAGAGTCTGGAAGCAGACGTTCATCCACGGCGAGTTTTCCAGTCTCTTCTTAACAGTTCACGCTAAATTGGAGAATAAGGACAAGGCTTTCTTCCAGTTAAGCAAAAGCGACGAAAACAGAGAGGTGCGTGTGCAGATCTCCAAAGAGTCCCGAGGTGGAATTCCTTTGTGGATCATCATCCTCAGTATCCTCATAGGACTACTAATACTGGCACTGGTTATATTTTGTCTTTGGAAGTTTGGCTTCTTTAAGAGAAAATCAGTGGAAGACATGAAGGAGGATATGAGAGACAGTTAAAGGCTCCAGTCTTCAGGTCTGCAGCCTTCAAAAGCCCTCAGGTcaaactcacactcacagaCCCACAGAGATGCTACACATTACAGTTTAACAGAATGGACCAGAAGCATCACCAACATCCACCTGAAGATCTTGATACGGAAGATGTACTCTAGATTGTTTGGATTTTCAGGATGGCTTCTCAACCTTGAAAGTCAGCAGTTGGACTTTGGGTTGTCGTCTTATATATGCATCATGCTTTATGCCTTTCAAAACCCAGCACAAGAGCGCCACATTTTAACATTGGAGTAAGCTAGTGTGAGTTATCACTGAaaaatatgccttttttttccccaaaaaacaGCAGTTGAGCCAATCgtcatatgaatctggaatgattgacaatCGTGTAGGTGTTTTAAACTGTACGATATTTACCGATGCCCCCtgaaagccccgcccccttctccCTATCATATGCTCCCTCGCCATCTGTCAAagtaaatggagaatatttgGAGTTCATTACCgggaaataaaatctatcaatttATATTACACTTGTATGTacagctaacattagacaagaaTATAGTGAAAATCCGttagctatatttattaaagatgccACTGAAATCTTTTGgccagaagagaaaaaaggctgaaaatCTACAAATAATCATCAGACATATTCAAACAGCACACTCAAGCCCACTGCagtagaaactggagtgtgcGTATATACAGAGTTTTATGGTAACCACCAAGCCTTTTTTTGCCCCATAAGCATAGTGATTACCGTAAAACCCTCATGCATATGTGTACTCCAATTTCTACAAGACaagaaatgtatatattattccTCTTCAGGGTTAGCAGGTCTGCAAAGCCCATTTGGTGCTCTATGACCAACTTAACAGAAATTGTGATATAGTAGTGAATTTCAGCTAAATGGAAATCCAAATCCAAACCAAAGCAGCTGTTTTATATAACTATGTATAAACCCTCAAAACAGATCACATCAAATCTTCTCCAGTGCTCAGAGGCCATGTTGTCTAATCTAACCATGCCATTGGATATCTTTATACcaatgaaaaatgacaaaaagaatGGAAAATCCCACCAAATCTGAAGATTTCATCATATCCTCTGCATCACATTTCACACCGGAGCTTCTTTAATGCCCTTCAGCCATGCCCTCATGTCTCAGCTACACCAATGGAGGCCTTTACATGAATAaacgacattttttttttaatcgtaaaatatatatatatatatcatttgtGCTCAATATATAGCTAGTGTTGTTTCTTTAAGGCTAACTGACTGTTTTGGCACATTCCTCTGCTTTTATGCAGCATTTGACACTGATATTCATGACATTCTTCAAGTTTTTCCTCACCGAAGTGCTGGGGGATCTGACTGattgtactgtaaatgtatataagagTAAAATTGTATATAGAGCGATGTTTGCAATAATACTTGTAATTTAATGACTATCAGAATGATCAATAACCCCTTGTTCCTATAGTAATGGAAAACACACTCTACTGCAAAGTCCCTCGGGGGGGTTCAGATTACTTAGAATTCAAGTTAGTTTTTAGTAGCAACTGAAAATCTGTAAATTTCTTAAAAttggaaacatttaatttaattgtaagTCTGcccctatttttttctttttaattagtGCTTTTTTTATTACGTTACATTCCGCTGATGAGTTTGCTCACGAAACAACCTACTATTAACAAATGTTATGCAGTGTACATGTTTtccagttgttgttgtttttaaaaaaatttctgctTTATAATATTGCATAGTTTTTCCATCATTGTTTCAGCTCTTGTCTTGGGCTAATCATGTGCCGATAACCAGTTGTACAATTTATTGCGTTATTCAACACAAACATTGGCACTTCACTATTCCTTCGTTACGTTGATGTGAAGGCTGTATGTTTTGATTAACAGCCATGTTTGGGTCAGAATTCATTTCCATGAATAAAATCAGCTAGCTGAGGTAGCACCACCTGAAGGTAACCCACCGCAATAAAGGTTCctttaatgttaaaatgctaCCCAGTAATATACGATGATCAAAGCATGAAGAGAAAcaaatcattatcattatatgACAAGACCAAAATTGCGCATTTAGATCTCGAACACAACCACAGACTTAAGTACGATTCAGAAGTCAGGAAAGAGTTTCGTATGTGAGGTGGAGTTTGCCTGAAACGGAGGCATATATTTATGCTTTTGGACTGTAACAACACTCAAagccaatattaaatgtataaatttgacgcagtggtgcagcaggtagcattgctgtctcACTGTTCCAGGGTTAccatttgatcctgagctcaggttaccaTGTGTGTGAAGTTTCATATGTTCCCTGTGTGTtagtatgggtttcctccaaattctctggtttcctttcaCTGTCCAAAAACTTGCAgataggtggactggctacgctaaattgccctaggtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatggtgtcctATGATGGCCTGGCTTCCCATCTCTCAGTGTTACCAGGCTTGTTACCTCTGTGACCCTTACACAACccaaataataggatgtgcagGATCAGGTGCTATTCAGCAACTATTCATACACCAATATATTAGTGAtgtactagactcctattagatagAGTTTGATCCTTGTCATTTCCTTATGTGTTACAATtcaattagaaaagaaaaaaaacagtttccttcttcagtccgtattttctatccctgatttttttctgtcttaaagGCATGTGTtcgtgtttaaaggtggtggacTAGATACTATTAAAAATCCTGTCTCTGATGCTTCTACTGAAGAAAATCTGGCAATCTTAGAggcataaaatatatacaggTATTTTGGATAATGAAATCAAACTTGAATGCATATGAAATGCATAACTCAGCTCTGAATACATGTAACCTTGCctgtgtaaatgatgtaaattttggatgttttataaataacagGACACCACATGACTGCGTCAGCTCGTCAGCTCAACTGAATGCTAGCAATGAATTAACTGCTGAATTAATTAACTTCATTAATTGTATATGACTTATGCATTGCTTAAAGTGCCAATGTTTTCTTATAACAATAggttttttgcatttctttcaaCCAAGTTACTGTTTGTATGACATCCTTCTTCTGCTCCATGTCACCAAATGGTACGGGAATTACAGCTGCCTATAAATCTGACATAATTAATCCGAAaatcagttacatttaattgaGGTTTCCAACTGTGTGTCCAGACTAGTGTGTTGTACAATCCACTGTTGTGATTCAGGATTTTTAAAACATCCTCTCTGAGAACTGAAAATGCATTGTAAAAAGGCATTTTCTAATGtctaaaatgtattaatgatTCAATTATTCATGTCTAGATTGTGAAAAACTGtttctgttattgtgtttttttaacatttctgattcagccttttatttctttcttatttttgtccactttctttcttaaaaaacacacatgctatGTTGAATTTTGTTTGATTATATTATACATGAGCTCATCCCCATTGGCATCAGCACTCCACTTCTGCAAGCACATGTATTAAAGAAAATACAGGCACGTTTAgggtgtgagaaagagagatttttGTTTAAAGTCACTGCTGTGAACCAAGTAATGCACTGGTTTTgtcatactgtgtatatattccTCTTGTTAGCACGGATTTGAAAAGGATTGCACATTATGTCTGGAACAATATGCACATGAAATAAATacgtgtttgtttgtttttttaatgacctca

Function

symbol description
itga1 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA1 (integrin subunit alpha 1).

NR:

description
integrin alpha-1-like

GO: NA

KEGG:

id description
K06480 ITGA1, CD49a; integrin alpha 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026942659.2 True 7524 mRNA 0.43 30 20050618 20110301

Neighbor

gene id symbol gene type direction distance location
LOC113543999 LOC108277114 coding upstream 26904 20018366 ~ 20023714 (+)
LOC117595711 NA coding upstream 244823 19792704 ~ 19805795 (+)
LOC113544133 NA coding upstream 250100 19797773 ~ 19800518 (+)
LOC113543930 NA coding upstream 385294 19649463 ~ 19665324 (+)
LOC113544003 NA coding upstream 501424 19540378 ~ 19549194 (+)
sub1a sub1,sub1a,LOC108276987,LOC107686443,LOC107562553,LOC107571117 coding downstream 7224 20117525 ~ 20123709 (+)
pstpip2 pstpip2,LOC107744171,LOC106568404 coding downstream 15234 20125535 ~ 20154803 (+)
mtrex skiv2l2,LOC107571110,LOC107744101,LOC106568406,LOC100380870 coding downstream 72353 20182654 ~ 20214754 (+)
hvcn1 hvcn1 coding downstream 193429 20303730 ~ 20313257 (+)
sftpba LOC108276523 coding downstream 220185 20330486 ~ 20342383 (+)
G272246 NA non-coding upstream 42421 19966127 ~ 20008197 (+)
LOC113544143 NA non-coding upstream 225386 19817178 ~ 19825232 (+)
G271923 NA non-coding upstream 565714 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 714738 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 821195 19229061 ~ 19229423 (+)
G272249 plpp1 non-coding downstream 113176 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 129593 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 199290 20309591 ~ 20309876 (+)
G272361 NA non-coding downstream 299422 20409723 ~ 20465046 (+)
G272360 NA non-coding downstream 332398 20442699 ~ 20447678 (+)
gfra2b gfra2 other upstream 107113 19853554 ~ 19943505 (+)
trnae-cuc_36 NA other upstream 201792 19848755 ~ 19848826 (+)
LOC117599326 NA other upstream 220350 19825962 ~ 19830268 (+)
G272180 NA other upstream 225386 19793912 ~ 19825232 (+)
LOC113543969 NA other upstream 263787 19782427 ~ 19786831 (+)
G272367 LOC108276637 other downstream 287979 20398280 ~ 20398947 (+)
G272374 NA other downstream 313098 20423399 ~ 20429143 (+)
G272408 NA other downstream 430024 20540325 ~ 20542954 (+)
LOC113544125 LOC100304632 other downstream 1249218 21359519 ~ 21361744 (+)
LOC113543995 NA other downstream 1365786 21476087 ~ 21478880 (+)

Expression


Co-expression Network