LOC113544003


Basic Information

Item Value
gene id LOC113544003
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047611.1
NCBI id CM018557.1
chromosome length 24879021
location 19540378 ~ 19549194 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034312298.1
AACTGCTGCAACACCAACCAACGGAACTACAGCCAACACAACAACTGCTGCAACCCCAACCAACGGAACTACAGCCAACACAACAACTGCTGCAACCCCAACCAACGGAACTACAGCCAACACAACAACTGCTGCAACCCCAACCAACGGAACTACAGCCAACACAACTGTTGCAACCTCACCCACTATAACCACAGgcATTCATATATTAAACTTCTCAttggaaataaatgaagaatttgACTTTGCACTCACCAGCCAAAGTAGTAGCAAGTGgaaaacatatgaaaataaaattaagcttTCAATTGATAAAAGTTACAGAAATGTACCTACCTACCTGAACAACTCTGCAACAGTGACTGGCTTCAGGTCTGGCAGTGTGATTGCAGACTTCAGTATTAAGGCAACAATTCCTAACCCTGATTTGGTATCAGCAAATGAACAACTTGTTCAAATTCTCCGTTCAGAGGAATTTAATGTGAACAATGATGCAATCAGTGGAAGTGtgaaaGCTGCACTGTATAACAGCAGTGGCAATATATATCCTGGAACAAATCTCAATCTGACCTGCAACCTTTTACCAAATAATGGCATAAAATGGACCCTGAATGGGAATGAACTACTCCTATCGgataagtataaaataaataacactgaactcactgtgaACAGTGTTACTCCCAGTGACAGTGGTCAGTATGCATGCAAAACAACAGTAAACTCTCTGCGCTATGTTAACTGGCAACTCATTACAATTCAGCCTTACCCCAATATCCAAGTGACCAGTAACAATACTGTAAAATGTGAGGATACAGCAATCACACTGCAGTGTTGTGTTCAGGAGATTTATCAAGTGACATGGACTGTTGACCCTGAAGCTTGCATCCAACCTTCAACAGTCTCTTCATCAGGCTGCTTATTATGTAACTATGCAATTAACAAAGAAGGCTGTCAGAATGGCCAAGTAATACAGTTCACATGTCAACTAACAAAACCCATCAGTGGAAATAGTTACGCAAAGAGCATCAGAATAGATGTACAGAACAAAAcatttaccTGCTCTGATAGTGTATTTGGAGCTGGAAATCTGGGAGAAGTACGCACTGTTGTCTGTAACGGAGACAAGGTTGGCTCTCAAAAGGCTTTGTGTAATTCATCACACCTCTGGGAACGTATAGAAGACAAGTGTGTTCTGCGCGTCTTTCAAGGTTTAAAAGATGAAGCTGAGAAATTACAGGTCCCAGGCATCCCCCAGTATATGGCCAGCCTTAGCAGTAATGCTACATTAGAGGCTCAAAACATCATTGACTCTCCAGCAACCATAACAACAATTGTAGATATACTGACAATTGTTTCAAATCTCTCACAAACAATTTTCATCAATCAAACCATTATGACGGATTTCCTACAAACAGTTGACGTCGTTGGATCAGTAGGTGCACGGGACACATGggtgtttttaaatgaaaacaatgcaACCACGAATGCCAGTTCTGAACTTCTAAACTCGACTGAAAATTTTGGACACAGACTCCCGGATGAAAACTTCAACATAACAACAAACTCTTCCTCTCTCAATAAAGCTAACATTACTGCACCCTTTTCTGGAGAATTTGGTATAAATTTAACTACCCAAGTAAGTTTTCCTGAGATTATAGCACCGACTTTCATCACCATCATAATTTCTTCAGCTTTCGACAATATCTTACCTGTTCGAAATCTGACCTACAATGACAGCAGTCAAACTGGCACAAGGATCAATGGAGATGTAGTCCTGATTGAGACAAACTCAACAATTAACAACATCTCCCTTTCTTTTGATATCAAAAATAAGGCACTTGTAAACCCTCAGTGTGTCTTTTGGAACTTTAGTCTTCTGAATGGTGTTGGTGGATGGGACTCAACTGGATGTCAATTAAAGACATTAGGGAATGAAACTGAAAGATTTACATGTGAGTGCAATCACACAACCTCTTTTTCAATCCTGATGTCACCATTTTCCCTGGATAAAGCTTTAATCTTAGACTATATAACTTACATTGGTGTTGGCATTTCCATGGCCAGCTTGGTTTTGTGCCTCATCATTGAAATCATTATATGGAAATCAGTGGCAAGAAATGACACATCCTACATGCGCCATGTCTCTGTAGTCAACATTGCTGTCTCCCTTCTGATTGCGGACATATGCTTCATCATTGGAGCAGCTGTTACCCAAGGAGAGGGTCCCTGCAGTACAGCAACATTCTTCATGCACTTCTTTTATCTTGCCCTTTTCTTCTGGATGTTGCTGTCAGCACTCTTGCTCCTCTACCGCACCATCATGGTCTTTTCCAGAATGACCAGAGGAGCAATGATGGCTATAGCCTTCACTGTTGGCTATGGAGCCCCATTAATCATAGCTGTCATTACTGTGGCATCTACAGCTGGAAGAAAAGGATACATTCAAAAAGATTATAATTGCTGGCTAAACTGGAATGAAACGAAGGCCCTCCTGGCATTTGTGATTCCTGCTCTGACTATTGTAGCTATAAACCTCCTGGTGCTTATTGTGGTTCTGTGTAAGATGATGAGGAGAGGAGTTAATGCTTCCACTCAGCCAGATGACAAACATCCCCTACTGGTCATTGCTAGATGTGTAGGGATTTTAACACCTCTCTTTGGTCTAACGTGGGGATTCGGCATTGGGACCATGGTGTCTCCGAACTTTGGGATTCATGTGGTGTTCGCATTCCTTAATTCACTGCAGGGtttctttattttgctgttCGGGACATTACTGGATAGTAAGGTCAGAGAAGCATTGGCAGGAAAGTTTTCACTGAGTAACTTAAGCTCTAACCGCACCAGGAGCACAAGTGCAGGACCATCATCCTCAAGTGGATTTCCTTTCATTCAGAGGTTACGGCGGAGAAATGTGTACAATGTATCGAATGGCCAAGTTAGGTCTTCAAGCAACTCAAATGAAGCTGCTGACAGTTCAGCAGCTGCACCTGAAACACAACTATAAGAGTCTGTTTGACCAcaaacattatactgtatatctacatACAAAATAAGAAAGGCATTTCTTAGCTGGTTGTTGTTTACAAAGAAGAAAgcagattaattaaaaaaaaaagaaaagaaaattaaccaataaaaattatatatatatata

Function

GO: NA

KEGG:

id description
K08458 ADGRF5, GPR116; adhesion G-protein coupled receptor F5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034312298.1 True 3160 mRNA 0.41 14 19540378 19549194

Neighbor

gene id symbol gene type direction distance location
LOC117599386 NA coding upstream 102 19530877 ~ 19540276 (+)
LOC117599385 NA coding upstream 51284 19485272 ~ 19489094 (+)
LOC117599384 NA coding upstream 72156 19449805 ~ 19468222 (+)
LOC113544087 NA coding upstream 100023 19424147 ~ 19440355 (+)
pbdc1 pbdc1,LOC107678025,LOC107687677,LOC107705089 coding upstream 165043 19369830 ~ 19375335 (+)
LOC113543930 NA coding downstream 100269 19649463 ~ 19665324 (+)
LOC117595711 NA coding downstream 243510 19792704 ~ 19805795 (+)
LOC113544133 NA coding downstream 248579 19797773 ~ 19800518 (+)
LOC113543999 LOC108277114 coding downstream 469172 20018366 ~ 20023714 (+)
itga1 itga1 coding downstream 501424 20050618 ~ 20110301 (+)
G271923 NA non-coding upstream 55474 19482497 ~ 19484904 (+)
G271884 NA non-coding upstream 204498 19333846 ~ 19335880 (+)
G271853 NA non-coding upstream 310955 19229061 ~ 19229423 (+)
G271576 NA non-coding upstream 528146 19011175 ~ 19012232 (+)
G271571 NA non-coding upstream 576598 18963355 ~ 18963780 (+)
LOC113544143 NA non-coding downstream 267984 19817178 ~ 19825232 (+)
G272246 NA non-coding downstream 416933 19966127 ~ 20008197 (+)
G272249 plpp1 non-coding downstream 674283 20223477 ~ 20226693 (+)
G272305 NA non-coding downstream 690700 20239894 ~ 20240346 (+)
G272347 NA non-coding downstream 760397 20309591 ~ 20309876 (+)
LOC113544004 LOC108276941 other upstream 19601 19489206 ~ 19520777 (+)
LOC113544086 LOC108261382,LOC108276944,LOC108262018 other upstream 125751 19376092 ~ 19414627 (+)
G271863 NA other upstream 296473 19241709 ~ 19243905 (+)
G271406 NA other upstream 1132880 18404269 ~ 18407498 (+)
si:ch73-234b20.5 LOC108276836,LOC108440734 other upstream 2439309 17099096 ~ 17101069 (+)
LOC113543969 NA other downstream 233233 19782427 ~ 19786831 (+)
G272180 NA other downstream 244718 19793912 ~ 19825232 (+)
LOC117599326 NA other downstream 276768 19825962 ~ 19830268 (+)
trnae-cuc_36 NA other downstream 299561 19848755 ~ 19848826 (+)
gfra2b gfra2 other downstream 304360 19853554 ~ 19943505 (+)

Expression


Co-expression Network